RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	STX2	P32856	288 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	CD151	P48509	253 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	UBE2I	P63279	158 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SIM1	P81133	766 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	NR1D2	Q14995	579 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	CLCA4	Q14CN2	919 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SEPT7	Q16181	437 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	PLEKHS1	Q5SXH7	462 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	GUSBP11	Q6P575	273 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	ZNF438	Q7Z4V0	828 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SLC9B2	Q86UD5	537 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	LILRA3	Q8N6C8	439 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	LKAAEAR1	Q8TD35	194 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	FBF1	Q8TES7	1133 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	UBXN4	Q92575	508 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	TMEM159	Q96B96	161 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	AARSD1	Q9BTE6	412 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	FUT8	Q9BYC5	575 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	WWP1	Q9H0M0	922 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	CDC42EP4	Q9H3Q1	356 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SARS2	Q9NP81	518 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SMYD2	Q9NRG4	433 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	KLHL42	Q9P2K6	505 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	SLC17A6	Q9P2U8	582 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	LRIT1	Q9P2V4	623 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	CPNE7	Q9UBL6	633 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	FAM8A1	Q9UBU6	413 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	PSMD13	Q9UNM6	376 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	APOBEC2	Q9Y235	224 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	RNF215	Q9Y6U7	377 aa		11.65	□□□□□ -0.54
PDLIM5-208	ENST00000504489	TRBV23OR9-2	A0A075B6M9	112 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CPED1	A4D0V7	1026 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CXorf49	A8MYA2	514 aa	Predicted RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489		E5RI56	91 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PPM1D	O15297	605 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLCO2B1	O94956	709 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM153B	P0C7A2	387 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CHRM3	P20309	590 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CD9	P21926	228 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PDHA2	P29803	388 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PHB	P35232	272 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLC19A1	P41440	591 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GPR3	P46089	330 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	E2F1	Q01094	437 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NAB1	Q13506	487 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	BOP1	Q14137	746 aa	Known RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GBX1	Q14549	363 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TMED2	Q15363	201 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RPE65	Q16518	533 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	KBTBD12	Q3ZCT8	623 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM153C	Q494X1	144 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	OTOA	Q7RTW8	1153 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	STRA8	Q7Z7C7	330 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLCO6A1	Q86UG4	719 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLC22A15	Q8IZD6	547 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	IFI44	Q8TCB0	444 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	KCNJ9	Q92806	393 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SH3KBP1	Q96B97	665 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RMDN2	Q96LZ7	410 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	INSM2	Q96T92	566 aa	Predicted RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CPNE1	Q99829	537 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MCMBP	Q9BTE3	642 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TXLNGY	Q9BZA5	131 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	STN1	Q9H668	368 aa	Known RBP	11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	POT1	Q9NUX5	634 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CDYL	Q9Y232	598 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MED16	Q9Y2X0	877 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	DHRS7	Q9Y394	339 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PSAT1	Q9Y617	370 aa		11.64	□□□□□ -0.55
PDLIM5-208	ENST00000504489	OR52A4P	A6NMU1	304 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RHPN2P1	A8MT19	583 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	IFRD1	O00458	451 aa	Predicted RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RFPL3	O75679	317 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VIP	P01282	170 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FTH1P19	P0C7X4	201 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MYBL2	P10244	700 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MTHFD1	P11586	935 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ACADL	P28330	430 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ATP5D	P30049	168 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SKIV2L2	P42285	1042 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PREP	P48147	710 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CLCN7	P51798	805 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PMS2	P54278	862 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CSE1L	P55060	971 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	HHEX	Q03014	270 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	HSPA14	Q0VDF9	509 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	BIRC2	Q13490	618 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	BRD3	Q15059	726 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ERCC6L	Q2NKX8	1250 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SYTL3	Q4VX76	610 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PPM1J	Q5JR12	505 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PERM1	Q5SV97	790 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	UGT3A1	Q6NUS8	523 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	WDR93	Q6P2C0	686 aa		11.63	□□□□□ -0.55

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