RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ABCB8Q9NUT2 735 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 PSME2Q9UL46 239 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 KAT6AQ92794 2004 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 A0A1W2PQ45 241 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 A0A1W2PQY0 241 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 MAGEB17A8MXT2 336 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 G3V2L1 256 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 SERPINB7O75635 380 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 MTHFD1P11586 935 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 TYW3Q6IPR3 259 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 NAPRTQ6XQN6 538 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ERMP1Q7Z2K6 904 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF438Q7Z4V0 828 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 RUVBL1Q9Y265 456 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 MT-ND1P03886 318 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 VARSP26640 1264 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 ACADVLP49748 655 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CDK9P50750 372 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 UGT2B15P54855 530 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CCNIQ14094 377 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 PLEKHG4Q58EX7 1191 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 GCNT6Q5T4J0 391 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 TRNP1Q6NT89 227 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CHSY3Q70JA7 882 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 C17orf64Q86WR6 236 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 KLHL32Q96NJ5 620 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 SUV39H2Q9H5I1 410 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 ELAC1Q9H777 363 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 OR2AG2A6NM03 316 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 OAZ2O95190 189 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 PTPN2P17706 415 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CRTC3Q6UUV7 619 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CYP2U1Q7Z449 544 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 DCAF4L2Q8NA75 395 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 OR5K1Q8NHB7 308 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 IGSF8Q969P0 613 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CGREF1Q99674 301 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 AIF1LQ9BQI0 150 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC39A3Q9BRY0 314 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 WDR12Q9GZL7 423 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 GALPQ9UBC7 116 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 A0A0D9SEW6 157 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 ERN1O75460 977 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CDK14O94921 469 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 TSPAN19P0C672 248 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 OR9I1Q8NGQ6 314 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 TRIB2Q92519 343 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 ZHX1-C8orf76Q96EF9 292 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 RPL10LQ96L21 214 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 PSKH2Q96QS6 385 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 YTHDF1Q9BYJ9 559 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC32A1Q9H598 525 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 SERPINA1P01009 418 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 ENO2P09104 434 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 FDXRP22570 491 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 RPS6KA3P51812 740 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 FBXW4P57775 412 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 RPS27LQ71UM5 84 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 TEFMQ96QE5 360 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 HTATIP2Q9BUP3 242 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 CRNNQ9UBG3 495 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC9A8Q9Y2E8 581 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 TSC22D4Q9Y3Q8 395 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 PCDHGA11Q9Y5H2 935 aa10.59□□□□□ -0.71
LIMCH1-205ENST00000503057 MYADML2A6NDP7 307 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 EI24O14681 340 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TLL1O43897 1013 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 SEC24AO95486 1093 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 C8AP07357 584 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 NR2F1P10589 423 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 GSK3BP49841 420 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 UBE3AQ05086 875 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 RAB41Q5JT25 222 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 GALNT18Q6P9A2 607 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 GALNT5Q7Z7M9 940 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF614Q8N883 585 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 C11orf65Q8NCR3 313 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 OR4F6Q8NGB9 312 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 SCLYQ96I15 445 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 RERGLQ9H628 205 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CXorf21Q9HAI6 301 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 IMPDH2P12268 514 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 RFX3P48380 749 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 UFM1P61960 85 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 EMX2Q04743 252 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 GALNT1Q10472 559 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TEAD4Q15561 434 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ARMC4Q5T2S8 1044 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TMEM214Q6NUQ4 689 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 HACD2Q6Y1H2 254 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 BNIPLQ7Z465 357 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CACUL1Q86Y37 369 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF655Q8N720 491 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 OR2AP1Q8NGE2 309 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 PHF21AQ96BD5 680 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 FERD3LQ96RJ6 166 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CYP2S1Q96SQ9 504 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CAPN14A8MX76 684 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ITGA1P56199 1179 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CHRNA6Q15825 494 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms