RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SLC9A3R1O14745 358 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 CTSLP07711 333 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 UQCRBP14927 111 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 WEE1P30291 646 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 YBX1P67809 324 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 EMX2Q04743 252 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 DHCR24Q15392 516 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 NR6A1Q15406 480 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 CYP2R1Q6VVX0 501 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 UBE2Q1Q7Z7E8 422 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 TMEM102Q8N9M5 508 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 PROKR1Q8TCW9 393 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 SCAMP4Q969E2 229 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 DUS3LQ96G46 650 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 DCUN1D1Q96GG9 259 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 PCDH12Q9NPG4 1184 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 CCL27Q9Y4X3 112 aa20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 NUP210Q8TEM1 1887 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-208ENST00000492980 FAM234BA2RU67 622 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 MAGEA13PA6NCF6 341 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CCDC154A6NI56 674 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 UPK3BL1B0FP48 263 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 UPK3BL2E5RIL1 263 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CAPNS1P04632 268 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CYP17A1P05093 508 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 HSPA8P11142 646 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 ATP1B2P14415 290 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 TIMP2P16035 220 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 AKT1P31749 480 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 NNMTP40261 264 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CREB5Q02930 508 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 PAGE3Q5JUK9 113 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 TICAM1Q8IUC6 712 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 ICA1LQ8NDH6 482 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 ITFG1Q8TB96 612 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 FAM83DQ9H4H8 585 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 PDE10AQ9Y233 779 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 MRPS23Q9Y3D9 190 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 ANXA5P08758 320 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CISD3P0C7P0 127 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 HSD17B1P14061 328 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 MYOGP15173 224 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 MSH3P20585 1137 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 DCDC1P59894 354 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 NFYCQ13952 458 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 TLR1Q15399 786 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 CDKL4Q5MAI5 379 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 DHFR2Q86XF0 187 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 SLCO4A1Q96BD0 722 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 BTBD9Q96Q07 612 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 NTMT1Q9BV86 223 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 TRIM54Q9BYV2 358 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 SUN2Q9UH99 717 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 IL36AQ9UHA7 158 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 TRPS1Q9UHF7 1281 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 LEF1Q9UJU2 399 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 AP4S1Q9Y587 144 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 PCDHA9Q9Y5H5 950 aa20.69■□□□□ 0.9
CCDC88B-208ENST00000492980 PRRC2BQ5JSZ5 2229 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 NUAK1O60285 661 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 STK16O75716 305 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 SYN1P17600 705 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ATP6V1B2P21281 511 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 RPIAP49247 311 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 HSPA14Q0VDF9 509 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 AP5B1Q2VPB7 878 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 TIGD2Q4W5G0 525 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 TCEAL5Q5H9L2 206 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 RNF165Q6ZSG1 346 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 Q6ZVL8 140 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 UBE2R2Q712K3 238 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ZFAND4Q86XD8 727 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 CELF5Q8N6W0 485 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ADCY4Q8NFM4 1077 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 MTX2O75431 263 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 POU2F2P09086 479 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 UBTFL6P0CB48 400 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 EBLN1P0CF75 366 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 G6PDP11413 515 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 EPB42P16452 691 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ETV3P41162 512 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 DGKGP49619 791 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 VASPP50552 380 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 SERPINA13PQ6UXR4 307 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 VRK3Q8IV63 474 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 CATSPER1Q8NEC5 780 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 TMEM125Q96AQ2 219 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 RSPRY1Q96DX4 576 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 MYCBPQ99417 103 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC12A9Q9BXP2 914 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ACTL8Q9H568 366 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 ARL15Q9NXU5 204 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC8A2Q9UPR5 921 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 RNF11Q9Y3C5 154 aa20.68■□□□□ 0.9
CCDC88B-208ENST00000492980 LOC730098B7Z3J9 87 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 FFAR3O14843 346 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 GPR42O15529 346 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 RNASEH1O60930 286 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 WDR47O94967 919 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 C8GP07360 202 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms