RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 SNF8Q96H20 258 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 PANX3Q96QZ0 392 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 FERD3LQ96RJ6 166 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 TRIM51Q9BSJ1 452 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 B3GNT4Q9C0J1 378 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 P2RY12Q9H244 342 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 MVB12BQ9H7P6 319 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 PISDQ9UG56 409 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 SLC24A2Q9UI40 661 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 PCDHGA7Q9Y5G6 932 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 FAM169AQ9Y6X4 670 aa16.93■□□□□ 0.3
MDC1-206ENST00000489540 AKAP13Q12802 2813 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 PMS2P1A4D2B8 440 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 H3BMM5 538 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 KPNA5O15131 536 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 TOX3O15405 576 aaPredicted RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 CAPN5O15484 640 aaPredicted RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 TTC4O95801 387 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 HGFP14210 728 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 PGAM1P18669 254 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 CCR7P32248 378 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 CAPZBP47756 277 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 ADARP55265 1226 aaKnown RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 BRD3Q15059 726 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 LONRF1Q17RB8 773 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 SNAP47Q5SQN1 464 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 CLEC14AQ86T13 490 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 CILP2Q8IUL8 1156 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 AGGF1Q8N302 714 aaeCLIP16.92■□□□□ 0.3
MDC1-206ENST00000489540 BBOF1Q8ND07 529 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 ACVR1CQ8NER5 493 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 CALML6Q8TD86 181 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 ASZ1Q8WWH4 475 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 TRIM44Q96DX7 344 aaPredicted RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 C9orf72Q96LT7 481 aa16.92■□□□□ 0.3
MDC1-206ENST00000489540 C16orf45Q96MC5 204 aaPredicted RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 EBNA1BP2Q99848 306 aaKnown RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 TRIM56Q9BRZ2 755 aaKnown RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 MN1Q10571 1320 aaPredicted RBP16.92■□□□□ 0.3
MDC1-206ENST00000489540 UBA6A0AVT1 1052 aaPredicted RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 A8MU76 341 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 NVLO15381 856 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 RRP8O43159 456 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 TLX3O43711 291 aaPredicted RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 SEC31AO94979 1220 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 APOA4P06727 396 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 ANKRD34CP0C6C1 535 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 ITGB6P18564 788 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 ACADLP28330 430 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 EIF2S3P41091 472 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 ITGA8P53708 1063 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 PCBP4P57723 403 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 DHX9Q08211 1270 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 BOP1Q14137 746 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 TMEM164Q5U3C3 297 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 DUS1LQ6P1R4 473 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.91■□□□□ 0.3
MDC1-206ENST00000489540 ZNF248Q8NDW4 579 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 GABPB2Q8TAK5 448 aaPredicted RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 LPGAT1Q92604 370 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 RSC1A1Q92681 617 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 TGM7Q96PF1 710 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 TRIM31Q9BZY9 425 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 C20orf96Q9NUD7 363 aaPredicted RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 INTS10Q9NVR2 710 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 KLHL3Q9UH77 587 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 MYLKQ15746 1914 aa16.91■□□□□ 0.3
MDC1-206ENST00000489540 ZFC3H1O60293 1989 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 MAP1BP46821 2468 aaKnown RBP16.91■□□□□ 0.3
MDC1-206ENST00000489540 COL27A1Q8IZC6 1860 aaPredicted RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 A0A087WV48 116 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 IQCF5A8MTL0 148 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 B4E171 279 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 BHMG1C9JSJ3 638 aaPredicted RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 AGRPO00253 132 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 GPC4O75487 556 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 ESR1P03372 595 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 CCL4P13236 92 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 ITIH1P19827 911 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 AOAHP28039 575 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 FMO4P31512 558 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 TSPAN7P41732 249 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 GFERP55789 205 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 EIF3BP55884 814 aaKnown RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 ARL4CP56559 192 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 CKAP4Q07065 602 aaKnown RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 HSPA14Q0VDF9 509 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 TMED2Q15363 201 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 BBS9Q3SYG4 887 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 LRRC69Q6ZNQ3 347 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 ZNF572Q7Z3I7 529 aaPredicted RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 PHC3Q8NDX5 983 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 LRRC39Q96DD0 335 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 BIRC8Q96P09 236 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 TAAR9Q96RI9 348 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 ERP44Q9BS26 406 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 TFB2MQ9H5Q4 396 aaKnown RBP16.9■□□□□ 0.3
MDC1-206ENST00000489540 CDC23Q9UJX2 597 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 ASF1AQ9Y294 204 aa16.9■□□□□ 0.3
MDC1-206ENST00000489540 SNX24Q9Y343 169 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms