RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KLC2Q9H0B6 622 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 SLC26A1Q9H2B4 701 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 DMRT3Q9NQL9 472 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 PKD2L2Q9NZM6 624 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 ATXN10Q9UBB4 475 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 NPIPA1Q9UND3 350 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 CDYLQ9Y232 598 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 DNAJC16Q9Y2G8 782 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 SPTBP11277 2137 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 CPAMD8Q8IZJ3 1885 aa7.75□□□□□ -1.17
USP54-211ENST00000474929 PKD1L1Q8TDX9 2849 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 NSG1A0A0A6YYJ2 146 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 DDX3XO00571 662 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP54-211ENST00000474929 SMPD2O60906 423 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 PGLSO95336 258 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 ZNF8P17098 575 aaPredicted RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 HLA-DPA1P20036 260 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 CA4P22748 312 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 EEF1DP29692 281 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 SDC4P31431 198 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 KRT9P35527 623 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 NSG1P42857 185 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 KPNA2P52292 529 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 STC1P52823 247 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 AIF1P55008 147 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 SLC25A35Q3KQZ1 300 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 KIAA0930Q6ICG6 404 aaPredicted RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 TIGD7Q6NT04 549 aaPredicted RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 CNSTQ6PJW8 725 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 CRTC3Q6UUV7 619 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 RRAGAQ7L523 313 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 STRADAQ7RTN6 431 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 PHLDB2Q86SQ0 1253 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 TSPAN33Q86UF1 283 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 HOOK3Q86VS8 718 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 PASD1Q8IV76 773 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 ARHGAP12Q8IWW6 846 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 HORMAD2Q8N7B1 307 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 BEND7Q8N7W2 519 aaPredicted RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 FAM57AQ8TBR7 257 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 BRIX1Q8TDN6 353 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP54-211ENST00000474929 CFAP57Q96MR6 1250 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 NUDCD1Q96RS6 583 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 TRIM51Q9BSJ1 452 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 NAA15Q9BXJ9 866 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 PITPNM3Q9BZ71 974 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 GTPBP4Q9BZE4 634 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 UCK2Q9BZX2 261 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 OR2AG1Q9H205 316 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 LRRC19Q9H756 370 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 ZNF160Q9HCG1 818 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 TRIM39Q9HCM9 518 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 FAM207AQ9NSI2 230 aaPredicted RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 RIC8BQ9NVN3 520 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 PLA2G3Q9NZ20 509 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 KIAA1468Q9P260 1216 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 NOCTQ9UK39 431 aaKnown RBP7.74□□□□□ -1.17
USP54-211ENST00000474929 ALG6Q9Y672 507 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 ZANQ9Y493 2812 aa7.74□□□□□ -1.17
USP54-211ENST00000474929 OR6C74A6NCV1 312 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FAM72CH0Y354 149 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 J3KR12 359 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 RASGRF2O14827 1237 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 SLC25A14O95258 325 aaPredicted RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 WDPCPO95876 746 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 PRR35P0CG20 571 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 ICAM2P13598 275 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 ZNF24P17028 368 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CD53P19397 219 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 RFC1P35251 1148 aaPredicted RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 PTGS2P35354 604 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FLT3P36888 993 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 GABRB2P47870 512 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 LMAN1P49257 510 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 ARSFP54793 590 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 DRG2P55039 364 aaKnown RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 FKBP3Q00688 224 aaKnown RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 PMP22Q01453 160 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 IL10RBQ08334 325 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 XRCC4Q13426 336 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 OLIG2Q13516 323 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 GTF2H3Q13889 308 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 DAZAP2Q15038 168 aaPredicted RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 VWA3BQ502W6 1294 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FAM72AQ5TYM5 149 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 C1orf189Q5VU69 101 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FAM72DQ6L9T8 149 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 HEPHL1Q6MZM0 1159 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 C3P1Q6ZMU1 363 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 OVCH1Q7RTY7 1134 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CD163Q86VB7 1156 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FAM72BQ86X60 149 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CIARTQ8N365 385 aaPredicted RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 WDTC1Q8N5D0 677 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 LINC00301Q8NCQ3 95 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 TMEM35BQ8NCS4 154 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 GPR150Q8NGU9 434 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 GPT2Q8TD30 523 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CCHCR1Q8TD31 782 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms