RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 AKR1B1P15121 316 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 TMEM11P17152 192 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 MSH3P20585 1137 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 SHC1P29353 583 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 NR2C2P49116 596 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 CAMPP49913 170 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 PSMC6P62333 389 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 KCNJ10P78508 379 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 IFI35P80217 286 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 NUCB1Q02818 461 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 STK4Q13043 487 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 MAD2L1Q13257 205 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 ADIPOQQ15848 244 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 FFAR4Q5NUL3 377 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 DPPA4Q7L190 304 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 RNF168Q8IYW5 571 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 SCML4Q8N228 414 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 C1orf131Q8NDD1 294 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 ERP27Q96DN0 273 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 SAT2Q96F10 170 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 RRNAD1Q96FB5 475 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 ABHD8Q96I13 439 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 PCGF1Q9BSM1 259 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 PLK3Q9H4B4 646 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 PDE7BQ9NP56 450 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 SIX2Q9NPC8 291 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 RPS6KA6Q9UK32 745 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 FBXL2Q9UKC9 423 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 TMEM5Q9Y2B1 443 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 R3HDM2Q9Y2K5 976 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 KLHL20Q9Y2M5 609 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 TTLL3Q9Y4R7 772 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 SNX8Q9Y5X2 465 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 DUXAA6NLW8 204 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 B4DLN1 442 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ATP2A1O14983 1001 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 TIMM44O43615 452 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 TPPPO94811 219 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 MOCS3O95396 460 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 IGHV4-38-2P0DP08 117 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 SELLP14151 372 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 CSF2RAP15509 400 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 PON1P27169 355 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ACADLP28330 430 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 EIF2DP41214 584 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 APOBEC1P41238 236 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 PRCPP42785 496 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 MRPL12P52815 198 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ZBED6P86452 979 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 TFAP4Q01664 338 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 BECN1Q14457 450 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 DECR1Q16698 335 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 PCGF3Q3KNV8 242 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 TMEM198Q66K66 360 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ACSM2BQ68CK6 577 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 C18orf63Q68DL7 685 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 PLXDC2Q6UX71 529 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 TSPAN33Q86UF1 283 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 CDC20BQ86Y33 519 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 MAP7D3Q8IWC1 876 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 OR8H2Q8N162 312 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 LSMEM1Q8N8F7 131 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 POC5Q8NA72 575 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 OR8K5Q8NH50 307 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 OR2T6Q8NHC8 308 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 GRHL3Q8TE85 626 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ZNRF4Q8WWF5 429 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 JAKMIP2Q96AA8 810 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 SERINC2Q96SA4 455 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 SIL1Q9H173 461 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 LRMDAQ9H2I8 198 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 LTB4R2Q9NPC1 389 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ACSS1Q9NUB1 689 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 ATAD3AQ9NVI7 634 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 MTMR10Q9NXD2 777 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 NKIRAS2Q9NYR9 191 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 CWC15Q9P013 229 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 KLHL8Q9P2G9 620 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 CLIC4Q9Y696 253 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 PASKQ96RG2 1323 aa2.86□□□□□ -1.95
CCDC88A-212ENST00000474059 OR2A25A4D2G3 310 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ANKRD66B4E2M5 251 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 H3BQ06 376 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 CTDSP2O14595 271 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ENTPD3O75355 529 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 DAB1O75553 588 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ERAL1O75616 437 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 NR3C1P04150 777 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 SRPRAP08240 638 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 NR2F1P10589 423 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ANXA7P20073 488 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 HOXC9P31274 260 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC15A1P46059 708 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 NRIP1P48552 1158 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 MFAP4P55083 255 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC8A3P57103 927 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 TAS2R40P59535 323 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 MRPS34P82930 218 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 COG7P83436 770 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 MBTD1Q05BQ5 628 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms