RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PPM1MQ96MI6 270 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 DESI2Q9BSY9 194 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 AKIRIN1Q9H9L7 192 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 LHX9Q9NQ69 397 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 FGF21Q9NSA1 209 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 KCNMB2Q9Y691 235 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 C17orf113A0A1B0GUU1 675 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 UBA6A0AVT1 1052 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 MIF4GDA9UHW6 222 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 CFAP99D6REC4 459 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 ARCN1P48444 511 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 HSD11B2P80365 405 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 ACY1Q03154 408 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 TLE1Q04724 770 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 DNASE1L3Q13609 305 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 TMEM135Q86UB9 458 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 SERPINA9Q86WD7 417 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 GAS2L3Q86XJ1 694 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 PIANPQ8IYJ0 282 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 UBL4BQ8N7F7 174 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 TTC13Q8NBP0 860 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 SLC35B2Q8TB61 432 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 HEXDCQ8WVB3 486 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 ABHD17AQ96GS6 310 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 FCRL4Q96PJ5 515 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 CCM2Q9BSQ5 444 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 EPN3Q9H201 632 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 OR52A5Q9H2C5 316 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 LRRC40Q9H9A6 602 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 COG4Q9H9E3 785 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 ZNF71Q9NQZ8 489 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 NLE1Q9NVX2 485 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 ZDHHC3Q9NYG2 299 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 KCND3Q9UK17 655 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 PADI1Q9ULC6 663 aa18.3■□□□□ 0.52
CCDC88B-206ENST00000473405 USP9YO00507 2555 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 GOLGA6L9A6NEM1 432 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 KATNA1O75449 491 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 ZBTB11O95625 1053 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 MT-ND3P03897 115 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 NTRK1P04629 796 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 CCNYL3P0C7X3 344 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 TPH1P17752 444 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 TUBB4BP68371 445 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 TUBB2AQ13885 445 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 ERV3-1Q14264 604 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 GSE1Q14687 1217 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 POU6F1Q14863 301 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 GPR19Q15760 415 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 FBXO38Q6PIJ6 1188 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 BPHLQ86WA6 291 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 CARFQ8N187 725 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 CLDN19Q8N6F1 224 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 ACVR1CQ8NER5 493 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 ZNF501Q96CX3 271 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 RUFY1Q96T51 708 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 NRTNQ99748 197 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 TMEM121Q9BTD3 319 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 TUBB2BQ9BVA1 445 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 PIH1D1Q9NWS0 290 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 POMT2Q9UKY4 750 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 BTRCQ9Y297 605 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 PCDHB3Q9Y5E6 796 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 HEBP2Q9Y5Z4 205 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 CAPN6Q9Y6Q1 641 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 COLEC10Q9Y6Z7 277 aa18.29■□□□□ 0.52
CCDC88B-206ENST00000473405 SNRNP200O75643 2136 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 C21orf140B9A014 251 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 CREG1O75629 220 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 AP2A1O95782 977 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 PTMAP06454 111 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 POLR2CP19387 275 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 NDUFS1P28331 727 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 PDHA2P29803 388 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 ARL4DP49703 201 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 KIF5AQ12840 1032 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 LAMB3Q13751 1172 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 DBN1Q16643 649 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 SKIDA1Q1XH10 827 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 P3H1Q32P28 736 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 ZRANB3Q5FWF4 1079 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 SYCE1Q8N0S2 351 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 OR4E2Q8NGC2 313 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 LRRC45Q96CN5 670 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 HES6Q96HZ4 224 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 ACTL8Q9H568 366 aa18.28■□□□□ 0.52
CCDC88B-206ENST00000473405 FER1L5A0AVI2 2057 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 MROH6A6NGR9 719 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 PSMA3P25788 255 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 PREPP48147 710 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 SEPT6Q14141 434 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 ARMC6Q6NXE6 501 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 FAM199XQ6PEV8 388 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 TAB3Q8N5C8 712 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 SLC38A9Q8NBW4 561 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 ATG4AQ8WYN0 398 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 CDKN2AIPNLQ96HQ2 116 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 POLHQ9Y253 713 aa18.27■□□□□ 0.52
CCDC88B-206ENST00000473405 TNRC6AQ8NDV7 1962 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 CDC14CA4D256 554 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms