RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SEC16AO15027 2179 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 IGLV3-16A0A075B6K0 115 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 TRBV5-4A0A0C4DH59 114 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 UBA6A0AVT1 1052 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 OR6C74A6NCV1 312 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 TLCD2A6NGC4 264 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 EBLN1P0CF75 366 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 FGF5P12034 268 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 CCR10P46092 362 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 LMAN1P49257 510 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 ARL4DP49703 201 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 CACNG1Q06432 222 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 TUBB3Q13509 450 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 SNX1Q13596 522 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 MAP7Q14244 749 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 OASLQ15646 514 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 SKIDA1Q1XH10 827 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 CAPRIN2Q6IMN6 1127 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 ARMC6Q6NXE6 501 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 C6orf15Q6UXA7 325 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 CERS6Q6ZMG9 384 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 PPP1R21Q6ZMI0 780 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 PRUNE1Q86TP1 453 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 LINC00523Q86TU6 105 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 PPP1R3BQ86XI6 285 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 SLC13A5Q86YT5 568 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 PIANPQ8IYJ0 282 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 DNAAF3Q8N9W5 541 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 STARD8Q92502 1023 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 CCM2Q9BSQ5 444 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 EPN3Q9H201 632 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 KIR3DX1Q9H7L2 352 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 VPS37BQ9H9H4 285 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 ETNK1Q9HBU6 452 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 SMARCAL1Q9NZC9 954 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 ZNF148Q9UQR1 794 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 HEBP2Q9Y5Z4 205 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 MRPS18BQ9Y676 258 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 COLEC10Q9Y6Z7 277 aa15.32■□□□□ 0.04
CCDC88B-205ENST00000472524 OR51F1A6NGY5 319 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 E7EVH7 732 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 SPAG6O75602 509 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 TIAF1O95411 115 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 FOLR1P15328 257 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 POLR2CP19387 275 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 MSNP26038 577 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 NDUFS1P28331 727 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 DLSTP36957 453 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 CDC20Q12834 499 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 DBN1Q16643 649 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 C16orf46Q6P387 395 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 CYB5D1Q6P9G0 228 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 CLDN19Q8N6F1 224 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 OR4E2Q8NGC2 313 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 ZFPM2Q8WW38 1151 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 SLC41A2Q96JW4 573 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 FERD3LQ96RJ6 166 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 CD180Q99467 661 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 PDE7BQ9NP56 450 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 SEMA5BQ9P283 1151 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 TUBD1Q9UJT1 453 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 CROTQ9UKG9 612 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 RARRES3Q9UL19 164 aa15.31■□□□□ 0.04
CCDC88B-205ENST00000472524 C17orf113A0A1B0GUU1 675 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 IFRD1O00458 451 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 GAS8O95995 478 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 ETS1P14921 441 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 F8A1P23610 371 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 OAS2P29728 719 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 PDHA2P29803 388 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 STIP1P31948 543 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 FDFT1P37268 417 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 PREPP48147 710 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 KPNA2P52292 529 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 SRSF1Q07955 248 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 CDH17Q12864 832 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 PRKAA1Q13131 559 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 RPS6KA1Q15418 735 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 ATP1A1-AS1Q5TC04 95 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 FBXO38Q6PIJ6 1188 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 PPM1MQ96MI6 270 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 CATSPER2Q96P56 530 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 FRMD8P1Q9BZ68 369 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 OR52A5Q9H2C5 316 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 ZNF71Q9NQZ8 489 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 SOHLH2Q9NX45 425 aa15.3■□□□□ 0.04
CCDC88B-205ENST00000472524 CCDC88CQ9P219 2028 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 CCDC162PA2VCL2 907 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 GSAPA4D1B5 854 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 MROH6A6NGR9 719 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 ERI2A8K979 691 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 KATNA1O75449 491 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 TCN2P20062 427 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 FOXN2P32314 431 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 GRIA1P42261 906 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 MC1RQ01726 317 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 ACY1Q03154 408 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 DEFB109BQ30KR1 87 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 MEI1Q5TIA1 1274 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms