RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ARL5A	Q9Y689	179 aa		10.85	□□□□□ -0.67
PTPN7-204	ENST00000462815	CSMD2	Q7Z408	3487 aa		10.85	□□□□□ -0.67
PTPN7-204	ENST00000462815	AKAP9	Q99996	3911 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	APC	P25054	2843 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SLC9B1P1	A6NJY1	282 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	BTN3A3	O00478	584 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	BTN3A1	O00481	513 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	CST8	O60676	142 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	KLF7	O75840	302 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SRP72	O76094	671 aa	Known RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	ST6GAL1	P15907	406 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	POLR2C	P19387	275 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	COMT	P21964	271 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	ADRA1A	P35348	466 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	GABRA4	P48169	554 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	PRLHR	P49683	370 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	VAV2	P52735	878 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	MPP3	Q13368	585 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	XRCC4	Q13426	336 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	OLIG2	Q13516	323 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	NCF4	Q15080	339 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	LONRF2	Q1L5Z9	754 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	EIF2S3L	Q2VIR3	472 aa	Known RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	CCDC70	Q6NSX1	233 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	RANBP10	Q6VN20	620 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SPOCD1	Q6ZMY3	1216 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	TMEM151B	Q8IW70	566 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SYTL1	Q8IYJ3	562 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	IPMK	Q8NFU5	416 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	ZNF398	Q8TD17	642 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	CPT1B	Q92523	772 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	INPP5D	Q92835	1189 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	PNPLA2	Q96AD5	504 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	BARD1	Q99728	777 aa	Known RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	MAK16	Q9BXY0	300 aa	Known RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	OR52A5	Q9H2C5	316 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	C1GALT1	Q9NS00	363 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SPTLC3	Q9NUV7	552 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	DDX56	Q9NY93	547 aa	Known RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	FKBPL	Q9UIM3	349 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	ERRFI1	Q9UJM3	462 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	SNX7	Q9UNH6	387 aa		10.84	□□□□□ -0.67
PTPN7-204	ENST00000462815	IGLV3-16	A0A075B6K0	115 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	hCG_1818297	A0A087WSY0	165 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815		A1L4Q6	167 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	KLHL33	A6NCF5	533 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	HCRTR1	O43613	425 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	DPM1	O60762	260 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	DDAH2	O95865	285 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	AGT	P01019	485 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	LDLR	P01130	860 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	MSH3	P20585	1137 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	PRDX3	P30048	256 aa	Known RBP	10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	SLC1A1	P43005	524 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	MARCKSL1	P49006	195 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ARL4D	P49703	201 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZNF140	P52738	457 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	PDE1B	Q01064	536 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ATP1A4	Q13733	1029 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	LLGL1	Q15334	1064 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	PTCHD3	Q3KNS1	767 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	TMTC4	Q5T4D3	741 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZNF787	Q6DD87	383 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	CDHR3	Q6ZTQ4	885 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	MED25	Q71SY5	747 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZC3H18	Q86VM9	953 aa	Known RBP	10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	HPS6	Q86YV9	775 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	RHOT2	Q8IXI1	618 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	KLHDC8B	Q8IXV7	354 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ADGRF3	Q8IZF5	1079 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	TMEM102	Q8N9M5	508 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	ACVR1C	Q8NER5	493 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	OR4E2	Q8NGC2	313 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	OR4K2	Q8NGD2	314 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	OR8K1	Q8NGG5	319 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	FLVCR1-AS1	Q8TAF5	88 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	TRAPPC9	Q96Q05	1148 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	RANBP9	Q96S59	729 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	VAT1	Q99536	393 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	MFRP	Q9BY79	579 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	TSPY26P	Q9H489	355 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	SYTL2	Q9HCH5	934 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	SOHLH2	Q9NX45	425 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	PKP3	Q9Y446	797 aa		10.83	□□□□□ -0.68
PTPN7-204	ENST00000462815	SPTB	P11277	2137 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	PCM1	Q15154	2024 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	TMEM150C	B9EJG8	249 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	MATN2	O00339	956 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZNF185	O15231	689 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	PSTPIP1	O43586	416 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	KRT86	O43790	486 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	CNOT3	O75175	753 aa	Known RBP	10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	CBX6	O95503	412 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	KLK3	P07288	261 aa	Predicted RBP	10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	CTSB	P07858	339 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	SLC35G4	P0C7Q5	338 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	PVR	P15151	417 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	COL8A1	P27658	744 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	NDUFS1	P28331	727 aa		10.82	□□□□□ -0.68
PTPN7-204	ENST00000462815	AKT1	P31749	480 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms