RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PFKFB1P16118 471 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 CYP11B2P19099 503 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 CBLP22681 906 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 PSMC4P43686 418 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 RAD23AP54725 363 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 CSE1LP55060 971 aaKnown RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 RALGDSQ12967 914 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 PLA2G7Q13093 441 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 ZNF234Q14588 700 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 CCDC184Q52MB2 194 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 KLHL26Q53HC5 615 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 OTUD3Q5T2D3 398 aaPredicted RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 IRAK1BP1Q5VVH5 260 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 WBP2NLQ6ICG8 309 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 SLC9B2Q86UD5 537 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 TMEM173Q86WV6 379 aaPredicted RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 SFR1Q86XK3 245 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 KMT5CQ86Y97 462 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 FAM114A1Q8IWE2 563 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 OR10S1Q8NGN2 331 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 OR5M8Q8NGP6 311 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 SECTM1Q8WVN6 248 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 SORCS1Q8WY21 1168 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 SMPDL3BQ92485 455 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 NR4A3Q92570 626 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 DAZLQ92904 295 aaKnown RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 SPACA9Q96E40 222 aaPredicted RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 LINGO1Q96FE5 620 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 BICD1Q96G01 975 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 IL17FQ96PD4 163 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 POLR3CQ9BUI4 534 aaPredicted RBP3.35□□□□□ -1.87
VPS41-207ENST00000439468 ABHD6Q9BV23 337 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 MRGBPQ9NV56 204 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 MIOSQ9NXC5 875 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 RNF150Q9ULK6 438 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 YIPF1Q9Y548 306 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 PCDHAC2Q9Y5I4 1007 aa3.35□□□□□ -1.87
VPS41-207ENST00000439468 A0A087WYN8 130 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 EDDM13A0A1B0GTR0 161 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 TCRBV21S2A2A0A5A6 115 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 MAGEA13PA6NCF6 341 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 ANKUB1A6NFN9 424 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 IPO8O15397 1037 aaKnown RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 HSPA4LO95757 839 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 TFAP2AP05549 437 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 LIPFP07098 398 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 OR52Z1P0C646 297 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 GM2AP17900 193 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 ZNF132P52740 706 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 TPD52P55327 224 aaPredicted RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 PNRC1Q12796 327 aaPredicted RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 KRTAP27-1Q3LI81 207 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 KRBOX4Q5JUW0 171 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 GCNT6Q5T4J0 391 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 TRNP1Q6NT89 227 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 RBPMS2Q6ZRY4 209 aaKnown RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 PIWIL4Q7Z3Z4 852 aaKnown RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 DSG4Q86SJ6 1040 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 IQCHQ86VS3 1027 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 PTOV1Q86YD1 416 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 CEP57L1Q8IYX8 460 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 CRYBG2Q8N1P7 616 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 AFAP1Q8N556 730 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 KBTBD3Q8NAB2 608 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 POC1AQ8NBT0 407 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 TMEM255BQ8WV15 326 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 FER1L6-AS2Q96M78 137 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 ZNF385AQ96PM9 386 aaKnown RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 NEK1Q96PY6 1258 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 SLX1AQ9BQ83 275 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 NAA11Q9BSU3 229 aaPredicted RBP3.34□□□□□ -1.87
VPS41-207ENST00000439468 HHATLQ9HCP6 504 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 EQTNQ9NQ60 294 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 DONSONQ9NYP3 566 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 DLGAP4Q9Y2H0 992 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 CCL27Q9Y4X3 112 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.34□□□□□ -1.87
VPS41-207ENST00000439468 ZNF541Q9H0D2 1346 aa3.34□□□□□ -1.87
VPS41-207ENST00000439468 BAZ1AQ9NRL2 1556 aaPredicted RBP3.34□□□□□ -1.88
VPS41-207ENST00000439468 IGHV4OR15-8A0A075B7B6 117 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 CTAGE9A4FU28 777 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 TRIM77I1YAP6 450 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 MEIS2O14770 477 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 F7P08709 466 aaPredicted RBP3.33□□□□□ -1.88
VPS41-207ENST00000439468 CTAGE8P0CG41 777 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 NR1D1P20393 614 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 CCR10P46092 362 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 MMP15P51511 669 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 DLX5P56178 289 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 CDK3Q00526 305 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 GAGE2BQ13066 116 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 GAGE2EQ4V326 116 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 NDUFAF5Q5TEU4 345 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 KRT80Q6KB66 452 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 GAGE2AQ6NT46 116 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 FAM122CQ6P4D5 195 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 SHQ1Q6PI26 577 aaKnown RBP3.33□□□□□ -1.88
VPS41-207ENST00000439468 IL27RAQ6UWB1 636 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 SUSD1Q6UWL2 747 aa3.33□□□□□ -1.88
VPS41-207ENST00000439468 UNQ6126/PRO20091Q6UXV3 157 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms