RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 HABP4Q5JVS0 413 aaKnown RBP16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 PRSS55Q6UWB4 352 aaPredicted RBP16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF554Q86TJ5 538 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 ITIH5Q86UX2 942 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 AADATQ8N5Z0 425 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 BORCS5Q969J3 196 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF689Q96CS4 500 aaPredicted RBP16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 PDLIM5Q96HC4 596 aaKnown RBP16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 MCOLN1Q9GZU1 580 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 P2RY12Q9H244 342 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 SMPD4Q9NXE4 827 aa16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 POLR3HQ9Y535 204 aaPredicted RBP16.13■□□□□ 0.17
CLCNKA-203ENST00000439316 ALPK3Q96L96 1907 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 PTPRSQ13332 1948 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 STX7O15400 261 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 RSL1D1O76021 490 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 SEC14L2O76054 403 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 DGKQP52824 942 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 TMBIM6P55061 237 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 RPS24P62847 133 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 CHRNB3Q05901 458 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 NR6A1Q15406 480 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF829Q3KNS6 432 aaPredicted RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 ZIK1Q3SY52 487 aaPredicted RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 CHCHD4Q8N4Q1 142 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 EFHBQ8N7U6 833 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 OR4F6Q8NGB9 312 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 TANKQ92844 425 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 IGSF21Q96ID5 467 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 ZNF583Q96ND8 569 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 RDH12Q96NR8 316 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 VN1R3Q9BXE9 311 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 CARS2Q9HA77 564 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 RC3H2Q9HBD1 1191 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 BPIFA1Q9NP55 256 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 TBC1D23Q9NUY8 699 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 PCDHGC4Q9Y5F7 938 aa16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 TNPO3Q9Y5L0 923 aaKnown RBP16.12■□□□□ 0.17
CLCNKA-203ENST00000439316 ILVBLA1L0T0 632 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ANKRD66B4E2M5 251 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 TBC1D4O60343 1298 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 NOL3O60936 208 aaKnown RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 NFATC3Q12968 1075 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 TRAF3Q13114 568 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 GTF2H2Q13888 395 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 AP5B1Q2VPB7 878 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 C18orf21Q32NC0 220 aaPredicted RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ANKDD1AQ495B1 522 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 BROXQ5VW32 411 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ANKRD26P1Q6NSI1 321 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 GTF2H2CQ6P1K8 395 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 SBSNQ6UWP8 590 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ANKS3Q6ZW76 656 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 UBE2Q1Q7Z7E8 422 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ADAMTSL2Q86TH1 951 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ADGRE3Q9BY15 652 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 GORASP2Q9H8Y8 452 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 FANCEQ9HB96 536 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 SARS2Q9NP81 518 aaKnown RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 DHRS7Q9Y394 339 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 CCL27Q9Y4X3 112 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 B4GAT1O43505 415 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 FOXD2O60548 495 aaPredicted RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 EFCAB14O75071 495 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 CLDN11O75508 207 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 EFEMP2O95967 443 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 RHOCP08134 193 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 CNPP09543 421 aaKnown RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 MATN1P21941 496 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 MTHFRP42898 656 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 TRAF2Q12933 501 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 GPR17Q13304 367 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 TUBA3CQ13748 450 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 RBM48Q5RL73 367 aaKnown RBP16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 XAF1Q6GPH4 301 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 RNF19BQ6ZMZ0 732 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 FRA10AC1Q70Z53 315 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 C16orf59Q7L2K0 433 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 THAP5Q7Z6K1 395 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 STK32CQ86UX6 486 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 CLEC4FQ8N1N0 589 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 STK40Q8N2I9 435 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 NUDT8Q8WV74 236 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ACDQ96AP0 544 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 FAM210AQ96ND0 272 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 HBEGFQ99075 208 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 IL23AQ9NPF7 189 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 DNMT3LQ9UJW3 386 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 ANKRD12Q6UB98 2062 aa16.11■□□□□ 0.17
CLCNKA-203ENST00000439316 IQCF5A8MTL0 148 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 H7C4K7 107 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 DFNA5O60443 496 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 ABCB7O75027 752 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 KCNH1O95259 989 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 OTCP00480 354 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 NFKBIAP25963 317 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 ARL1P40616 181 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 SLC11A2P49281 568 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 ABRAXAS2Q15018 415 aa16.1■□□□□ 0.17
CLCNKA-203ENST00000439316 AAK1Q2M2I8 961 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms