RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SLC26A11Q86WA9 606 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 ZC3HC1Q86WB0 502 aaKnown RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 RASGRP3Q8IV61 690 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 GSPT2Q8IYD1 628 aaKnown RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 FBF1Q8TES7 1133 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 ELMO1Q92556 727 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 GLMNQ92990 594 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 AARSD1Q9BTE6 412 aaKnown RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 WWP1Q9H0M0 922 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 OSGEPL1Q9H4B0 414 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 VPS37BQ9H9H4 285 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 RRAGDQ9NQL2 400 aaPredicted RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 KLHL42Q9P2K6 505 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 CPNE7Q9UBL6 633 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 TPRP12270 2363 aaKnown RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 H3BMM5 538 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 B4GAT1O43505 415 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 SPAG6O75602 509 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 TRIM16O95361 564 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 CD151P48509 253 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 RPIAP49247 311 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 DUSP3P51452 185 aaPredicted RBP12.14□□□□□ -0.47
USP40-205ENST00000430158 CDKN2DP55273 166 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 VSNL1P62760 191 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 SIM1P81133 766 aaPredicted RBP12.14□□□□□ -0.47
USP40-205ENST00000430158 ILKQ13418 452 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 SEPT7Q16181 437 aaKnown RBP12.14□□□□□ -0.47
USP40-205ENST00000430158 KBTBD12Q3ZCT8 623 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 PTRHD1Q6GMV3 140 aaKnown RBP12.14□□□□□ -0.47
USP40-205ENST00000430158 CEP128Q6ZU80 1094 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 EFL1Q7Z2Z2 1120 aaKnown RBP12.14□□□□□ -0.47
USP40-205ENST00000430158 PDZD3Q86UT5 571 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 SLC22A15Q8IZD6 547 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 IFI44Q8TCB0 444 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 KCNJ9Q92806 393 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 NAT6Q93015 286 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 CCDC74AQ96AQ1 378 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 TWSG1Q9GZX9 223 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 ACSS3Q9H6R3 686 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 UCK1Q9HA47 277 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 SLC40A1Q9NP59 571 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 PSMD13Q9UNM6 376 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 WASF3Q9UPY6 502 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 COMMD10Q9Y6G5 202 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 PCM1Q15154 2024 aa12.14□□□□□ -0.47
USP40-205ENST00000430158 AKAP13Q12802 2813 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 CHD8Q9HCK8 2581 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 A0A1W2PQM1 296 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 CPED1A4D0V7 1026 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 PDZK1P1A8MUH7 402 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 NTN3O00634 580 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 PFDN6O15212 129 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 WISP3O95389 354 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 TPBGLP0DKB5 382 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 MTHFD1P11586 935 aaKnown RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 SLC2A4P14672 509 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 DAB2P98082 770 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 PLOD1Q02809 727 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 CFHR1Q03591 330 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 SQSTM1Q13501 440 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 BOP1Q14137 746 aaKnown RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 NAA30Q147X3 362 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 SLMAPQ14BN4 828 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 EFTUD2Q15029 972 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP40-205ENST00000430158 ERCC6LQ2NKX8 1250 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 PPM1JQ5JR12 505 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 PLEKHS1Q5SXH7 462 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 N4BP2L1Q5TBK1 243 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 CDCP2Q5VXM1 449 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 DUS1LQ6P1R4 473 aaKnown RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 WDR93Q6P2C0 686 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 CYHR1Q6ZMK1 362 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 SPRED1Q7Z699 444 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 STRA8Q7Z7C7 330 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 OR6C4Q8NGE1 309 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 MAPK15Q8TD08 544 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 CD200R1Q8TD46 325 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 ASZ1Q8WWH4 475 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP40-205ENST00000430158 PANX3Q96QZ0 392 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 NDNQ99608 321 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 OLFM1Q99784 485 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 RHOJQ9H4E5 214 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 PPANQ9NQ55 473 aaKnown RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 ZFATQ9P243 1243 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 LRIT1Q9P2V4 623 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 FAM8A1Q9UBU6 413 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP40-205ENST00000430158 DHRS7Q9Y394 339 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 V9GYY5 206 aaPredicted RBP12.13□□□□□ -0.47
USP40-205ENST00000430158 AHCTF1Q8WYP5 2266 aa12.13□□□□□ -0.47
USP40-205ENST00000430158 SEC16AO15027 2179 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 HMX2A2RU54 273 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 F8W8V4 182 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 OPA1O60313 960 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 RFPL3O75679 317 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 FAM155BO75949 473 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 TSPAN12O95859 305 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 ABHD2P08910 425 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 SPTBP11277 2137 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms