RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZRANB3Q5FWF4 1079 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 GLT6D1Q7Z4J2 308 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 METTL23Q86XA0 190 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 BRSK1Q8TDC3 778 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 NODALQ96S42 347 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 DERL2Q9GZP9 239 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 NSUN3Q9H649 340 aaKnown RBP20.64■□□□□ 0.9
CTCF-202ENST00000401394 RASSF1Q9NS23 344 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 SMPD4Q9NXE4 827 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 LCHNA4D1U4 455 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 A6NL46 340 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 CLDN25C9JDP6 229 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 UMPSP11172 480 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 JUNBP17275 347 aaPredicted RBP20.64■□□□□ 0.89
CTCF-202ENST00000401394 SLC26A3P40879 764 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 HSPA7P48741 367 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 PPP2R2BQ00005 443 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 ZNF280BQ86YH2 543 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 COLGALT2Q8IYK4 626 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 LPCAT1Q8NF37 534 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 ELMO1Q92556 727 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 FAM162AQ96A26 154 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 RHBDF1Q96CC6 855 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 TUBA1CQ9BQE3 449 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 TMEM9Q9P0T7 183 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 XIRP2A4UGR9 3374 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 DICER1Q9UPY3 1922 aaKnown RBP20.64■□□□□ 0.89
CTCF-202ENST00000401394 ANKRD28O15084 1053 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 AQP9O43315 295 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 FADS2O95864 444 aaKnown RBP20.64■□□□□ 0.89
CTCF-202ENST00000401394 CHEK2O96017 543 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 SEMG2Q02383 582 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 GRB14Q14449 540 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 INAQ16352 499 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 CRY1Q16526 586 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 FAR1Q8WVX9 515 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 HTRA1Q92743 480 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 SIAEQ9HAT2 523 aa20.64■□□□□ 0.89
CTCF-202ENST00000401394 PRG3Q9Y2Y8 225 aaPredicted RBP20.64■□□□□ 0.89
CTCF-202ENST00000401394 OR7A17O14581 309 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 LSM1O15116 133 aaKnown RBP20.63■□□□□ 0.89
CTCF-202ENST00000401394 NDUFS2O75306 463 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 RHOQP17081 205 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 LINGO4Q6UY18 593 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 PROSER1Q86XN7 944 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 CD200R1Q8TD46 325 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 SLC39A13Q96H72 371 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 POLR1EQ9GZS1 481 aaKnown RBP20.63■□□□□ 0.89
CTCF-202ENST00000401394 ENPP5Q9UJA9 477 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 PLXNB2O15031 1838 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 SLC12A8A0AV02 714 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 EFNA1P20827 205 aaPredicted RBP20.63■□□□□ 0.89
CTCF-202ENST00000401394 FAM189BP81408 668 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 SERINC3Q13530 473 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 CBX2Q14781 532 aaPredicted RBP20.63■□□□□ 0.89
CTCF-202ENST00000401394 NADSYN1Q6IA69 706 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 CEP68Q76N32 757 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 TAS2R42Q7RTR8 314 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 CYP4Z1Q86W10 505 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 MCOLN3Q8TDD5 553 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 MUL1Q969V5 352 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 ZNF347Q96SE7 839 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 RIBC2Q9H4K1 309 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 AMBNQ9NP70 447 aa20.63■□□□□ 0.89
CTCF-202ENST00000401394 A8MX80 341 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 PRMT5O14744 637 aaPredicted RBP20.62■□□□□ 0.89
CTCF-202ENST00000401394 TBC1D4O60343 1298 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 C7P10643 843 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 PSMB9P28065 219 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 DCTP40126 519 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 SEPHS1P49903 392 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 CDC42EP1Q00587 391 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 VAC14Q08AM6 782 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 C10orf120Q5SQS8 335 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 CLDN19Q8N6F1 224 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 OR56A4Q8NGH8 313 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 NRBF2Q96F24 287 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 ASB2Q96Q27 587 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 KLHL25Q9H0H3 589 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 CCSER2Q9H7U1 834 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 TMEM248Q9NWD8 314 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 TMEFF2Q9UIK5 374 aaPredicted RBP20.62■□□□□ 0.89
CTCF-202ENST00000401394 MAGEL2Q9UJ55 1249 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 AREL1O15033 823 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 MC4RP32245 332 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 MASP1P48740 699 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 OCA2Q04671 838 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 ACVR1Q04771 509 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 TRIM32Q13049 653 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 SLC14A1Q13336 389 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 SOWAHCQ53LP3 525 aaPredicted RBP20.62■□□□□ 0.89
CTCF-202ENST00000401394 GDF6Q6KF10 455 aaPredicted RBP20.62■□□□□ 0.89
CTCF-202ENST00000401394 Q6ZPB1 254 aaPredicted RBP20.62■□□□□ 0.89
CTCF-202ENST00000401394 MS4A4AQ96JQ5 239 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 SERPINB11Q96P15 392 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 APOL5Q9BWW9 433 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 COMMD8Q9NX08 183 aa20.62■□□□□ 0.89
CTCF-202ENST00000401394 UGT2B11O75310 529 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 OXSR1O95747 527 aaPredicted RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 SERPINA1P01009 418 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms