RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 TMEM207Q6UWW9 146 aa13.65□□□□□ -0.22
SDC1-202ENST00000381150 ISCA2Q86U28 154 aa13.65□□□□□ -0.22
SDC1-202ENST00000381150 CDK5RAP1Q96SZ6 601 aaKnown RBP13.65□□□□□ -0.22
SDC1-202ENST00000381150 YTHDF1Q9BYJ9 559 aaKnown RBP13.65□□□□□ -0.22
SDC1-202ENST00000381150 ARHGAP39Q9C0H5 1083 aa13.65□□□□□ -0.22
SDC1-202ENST00000381150 MARCH4Q9P2E8 410 aaPredicted RBP13.65□□□□□ -0.22
SDC1-202ENST00000381150 LEF1Q9UJU2 399 aaPredicted RBP13.65□□□□□ -0.22
SDC1-202ENST00000381150 SPO11Q9Y5K1 396 aa13.65□□□□□ -0.22
SDC1-202ENST00000381150 H0YAE9 185 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 LCKP06239 509 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 PRSS56P0CW18 603 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 S100A5P33763 92 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 KCNC4Q03721 635 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 NDUFA5Q16718 116 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 LRIT3Q3SXY7 679 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 RAP1GAP2Q684P5 730 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 TRAF7Q6Q0C0 670 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 CCBE1Q6UXH8 406 aaPredicted RBP13.65□□□□□ -0.23
SDC1-202ENST00000381150 UBE2FQ969M7 185 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 FKBP10Q96AY3 582 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 LGALS12Q96DT0 336 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 VAT1Q99536 393 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 ACTR8Q9H981 624 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 GABRQQ9UN88 632 aa13.65□□□□□ -0.23
SDC1-202ENST00000381150 EFCAB9A8MZ26 197 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 ARVCFO00192 962 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 EIF3FO00303 357 aaPredicted RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 TNFRSF10BO14763 440 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 ANXA9O76027 345 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 APOA1P02647 267 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 ARCN1P48444 511 aaKnown RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 WNT3AP56704 352 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 HERVK_113P63132 956 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 HIST2H2ACQ16777 129 aaPredicted RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 SOWAHCQ53LP3 525 aaPredicted RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 SNAP47Q5SQN1 464 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 CCSAPQ6IQ19 270 aaPredicted RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 LRRC8DQ7L1W4 858 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 ARHGAP12Q8IWW6 846 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 FBXO39Q8N4B4 442 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 CLHC1Q8NHS4 586 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 TSGA13Q96PP4 275 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 OSBPL10Q9BXB5 764 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 ERVK-6Q9BXR3 956 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 SCUBE2Q9NQ36 999 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 SCN3BQ9NY72 215 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.64□□□□□ -0.236e-7■■□□□ 12.5
SDC1-202ENST00000381150 ABCD2Q9UBJ2 740 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 PMF1-BGLAPU3KQ54 211 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 AZGP1P25311 298 aaKnown RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 ARSDP51689 593 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 NR6A1Q15406 480 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 HACD2Q6Y1H2 254 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 USP51Q70EK9 711 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 PHACTR4Q8IZ21 702 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 C2CD4AQ8NCU7 369 aaPredicted RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 OR6Q1Q8NGQ2 317 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 LILRB4Q8NHJ6 448 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 HASPINQ8TF76 798 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 HDAC2Q92769 488 aaKnown RBP13.64□□□□□ -0.23
SDC1-202ENST00000381150 SLC47A1Q96FL8 570 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 TBATAQ96M53 351 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 TRIM54Q9BYV2 358 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 DCSTAMPQ9H295 470 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 RERGLQ9H628 205 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 GLOD4Q9HC38 313 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 TRPV5Q9NQA5 729 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 TLR9Q9NR96 1032 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 GALPQ9UBC7 116 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 USP34Q70CQ2 3546 aa13.64□□□□□ -0.23
SDC1-202ENST00000381150 NUAK1O60285 661 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 MT-ND2P03891 347 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 RAP2AP10114 183 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 THPOP40225 353 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 CD86P42081 329 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 ZNF33AQ06730 810 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 TP53BP2Q13625 1128 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 TRIM60Q495X7 471 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 MANEALQ5VSG8 457 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 ZNF598Q86UK7 904 aaKnown RBP13.63□□□□□ -0.23
SDC1-202ENST00000381150 EID3Q8N140 333 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 OR2T12Q8NG77 320 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 GIPC2Q8TF65 315 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 CEP19Q96LK0 163 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 ZMYM5Q9UJ78 669 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 C3orf18Q9UK00 162 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 VPS4AQ9UN37 437 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 TCRBV5S2A0A599 114 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 PRMT5O14744 637 aaPredicted RBP13.63□□□□□ -0.23
SDC1-202ENST00000381150 SSX4O60224 188 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 HOXC13P31276 330 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 OR4D1Q15615 310 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 RGMBQ6NW40 437 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 CYP2U1Q7Z449 544 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 EFHD2Q96C19 240 aaPredicted RBP13.63□□□□□ -0.23
SDC1-202ENST00000381150 LRRC3Q9BY71 257 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 HOXD1Q9GZZ0 328 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 ZFP14Q9HCL3 533 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 NDFIP2Q9NV92 336 aa13.63□□□□□ -0.23
SDC1-202ENST00000381150 ZNF221Q9UK13 617 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms