RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SNAP47Q5SQN1 464 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 PHF19Q5T6S3 580 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 TRMT10BQ6PF06 316 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 FOXR1Q6PIV2 292 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 VRK3Q8IV63 474 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 SPNS2Q8IVW8 549 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 NOA1Q8NC60 698 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 BBOF1Q8ND07 529 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 RCBTB1Q8NDN9 531 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 PHC3Q8NDX5 983 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 FBXO36Q8NEA4 188 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 NCSTNQ92542 709 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 RSC1A1Q92681 617 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 CCDC74BQ96LY2 380 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 BIRC8Q96P09 236 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 TCF12Q99081 682 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 NRTNQ99748 197 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 CARD6Q9BX69 1037 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 UCK1Q9HA47 277 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 SLC17A6Q9P2U8 582 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 ZC3H7BQ9UGR2 993 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 SATB2Q9UPW6 733 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 MAP1BP46821 2468 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 DMXL2Q8TDJ6 3036 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 LAMA5O15230 3695 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 BHMG1C9JSJ3 638 aaPredicted RBP13.04□□□□□ -0.32
VPS28-202ENST00000377348 E7ESA3 106 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 IFRD1O00458 451 aaPredicted RBP13.04□□□□□ -0.32
VPS28-202ENST00000377348 TTC4O95801 387 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 PROS1P07225 676 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 GSTM1P09488 218 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 HGFP14210 728 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 CCKBRP32239 447 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 PLTPP55058 493 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 GFERP55789 205 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 GABREP78334 506 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 GSTM4Q03013 218 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 HSPA14Q0VDF9 509 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 SQSTM1Q13501 440 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 PLCL1Q15111 1095 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 RNF187Q5TA31 235 aaPredicted RBP13.04□□□□□ -0.32
VPS28-202ENST00000377348 TMEM71Q6P5X7 295 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 ZNF449Q6P9G9 518 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 PDZD3Q86UT5 571 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 LRRC6Q86X45 466 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 RBM12BQ8IXT5 1001 aaKnown RBP13.04□□□□□ -0.32
VPS28-202ENST00000377348 ZBED8Q8IZ13 594 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 TMEM159Q96B96 161 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 TMEM74Q96NL1 305 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 FERD3LQ96RJ6 166 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 NAT9Q9BTE0 207 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 NRSN2Q9GZP1 204 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 RAB17Q9H0T7 212 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 GALPQ9UBC7 116 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 KLHL3Q9UH77 587 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 FBXO5Q9UKT4 447 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 CDYLQ9Y232 598 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 AK5Q9Y6K8 562 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 KIF26BQ2KJY2 2108 aa13.04□□□□□ -0.32
VPS28-202ENST00000377348 CCDC187A0A096LP49 1063 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CTAGE15A4D2H0 777 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 A8MU76 341 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 F8W8V4 182 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 NDC80O14777 642 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 PFDN6O15212 129 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 HAUS5O94927 633 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CTAGE8P0CG41 777 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 THRAP10827 490 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 PKMP14618 531 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 AMD1P17707 334 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 AOAHP28039 575 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 ACADLP28330 430 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CD151P48509 253 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CARSP49589 748 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 LIMK2P53671 638 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 PPP1CAP62136 330 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 TUBB2AQ13885 445 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 KRT33BQ14525 404 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 C16orf72Q14CZ0 275 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 RTP5Q14D33 572 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CLPPQ16740 277 aaPredicted RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 STEAP4Q687X5 459 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CNSTQ6PJW8 725 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 ZDHHC24Q6UX98 284 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CAPN12Q6ZSI9 719 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CTAGE6Q86UF2 777 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CTAGE4Q8IX94 777 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 MMGT1Q8N4V1 131 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 MNS1Q8NEH6 495 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 OR4D9Q8NGE8 314 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 OR5AR1Q8NGP9 310 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 FBXO25Q8TCJ0 367 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CALML6Q8TD86 181 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 TFGQ92734 400 aaPredicted RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 ART4Q93070 314 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 LRRC39Q96DD0 335 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 NXPE2Q96DL1 559 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CERS2Q96G23 380 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 LIN37Q96GY3 246 aaPredicted RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 PANX3Q96QZ0 392 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms