RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CENPNQ96H22 339 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 LMLNQ96KR4 655 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 POLR3HQ9Y535 204 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 SLC4A7Q9Y6M7 1214 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 PDLIM1O00151 329 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 PLOD2O00469 737 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 DLGAP1O14490 977 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 ETS2P15036 469 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 HTR1EP28566 365 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 CCT8P50990 548 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 FXNQ16595 210 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 MFSD2AQ8NA29 543 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 ANKRD60Q9BZ19 345 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 GRIP2Q9C0E4 1043 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 LATS2Q9NRM7 1088 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 WWOXQ9NZC7 414 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 OPTCQ9UBM4 332 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 ANGPTL3Q9Y5C1 460 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 COMMD3-BMI1R4GMX3 469 aa20.45■□□□□ 0.87
CCDC88B-203ENST00000359902 MSH3P20585 1137 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 VEGFBP49765 207 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 DGKQP52824 942 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 PTPN5P54829 565 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 SLC5A9Q2M3M2 681 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 MYLK3Q32MK0 819 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 TPRG1Q6ZUI0 275 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 CMTM8Q8IZV2 173 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 PAPD5Q8NDF8 572 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 SCRN2Q96FV2 425 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 PPP3R2Q96LZ3 170 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 PIF1Q9H611 641 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 OLAHQ9NV23 265 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 TMEM39AQ9NV64 488 aa20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 ZFC3H1O60293 1989 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-203ENST00000359902 TRAV19A0A0A6YYK7 116 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 A0A1W2PRU2 124 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 LEFTY2O00292 366 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 VILLO15195 856 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 SLC2A4P14672 509 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 JAK1P23458 1154 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 HRH2P25021 359 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 SNRPD1P62314 119 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 AASDHQ4L235 1098 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 RBM44Q6ZP01 1051 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 UBTD2Q8WUN7 234 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 SH3GL3Q99963 347 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 SMG9Q9H0W8 520 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 RPF2Q9H7B2 306 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 RDH14Q9HBH5 336 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 TLR9Q9NR96 1032 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 DENND4CQ5VZ89 1909 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 IFRD1O00458 451 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 FFAR3O14843 346 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 GPR42O15529 346 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 H6PDO95479 791 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 UMPSP11172 480 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 CA8P35219 290 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 NSG1P42857 185 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PIK3CGP48736 1102 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 OR4D2P58180 307 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PLOD1Q02809 727 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PTSQ03393 145 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 KIAA0040Q15053 153 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 LRRC66Q68CR7 880 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PRR23BQ6ZRT6 265 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 RALGPS2Q86X27 583 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 ECHDC3Q96DC8 303 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PPM1MQ96MI6 270 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 FARSBQ9NSD9 589 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 ANAPC2Q9UJX6 822 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PPIL1Q9Y3C6 166 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 PIKFYVEQ9Y2I7 2098 aa20.44■□□□□ 0.86
CCDC88B-203ENST00000359902 K7EPI3 171 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 LRG1P02750 347 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 VARSP26640 1264 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 PROSER1Q86XN7 944 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 BIRC7Q96CA5 298 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 C9orf16Q9BUW7 83 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 SLC46A2Q9BY10 475 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 SUV39H2Q9H5I1 410 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 ATP11BQ9Y2G3 1177 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 KANSL1LA0AUZ9 987 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 ACOX3O15254 700 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 RGS14O43566 566 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 BNIP3LO60238 219 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 FCGR1AP12314 374 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 NELFEP18615 380 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 HLA-FP30511 346 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 NR1H2P55055 460 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 RPL38P63173 70 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 SELPLGQ14242 412 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 ATP6AP1Q15904 470 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 CRY1Q16526 586 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 TTLL9Q3SXZ7 439 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 KRT80Q6KB66 452 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 METTL2BQ6P1Q9 378 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 MBOAT1Q6ZNC8 495 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 RFLNAQ6ZTI6 216 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 SPRED1Q7Z699 444 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 GPR65Q8IYL9 337 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms