RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LMAN2LQ9H0V9 348 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 EIF3KQ9UBQ5 218 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ADAMTS6Q9UKP5 1117 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 TCAF2A6NFQ2 919 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 I3L521 148 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 INMTO95050 263 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 PENKP01210 267 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 SMIM10L2AP0DMW4 78 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 SMIM10L2BP0DMW5 78 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 CCR10P46092 362 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 WSCD2Q2TBF2 565 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 PDE12Q6L8Q7 609 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 PJA1Q8NG27 643 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 MNTQ99583 582 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 RHOQP17081 205 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 MAZP56270 477 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 TLR1Q15399 786 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNHIT3Q15649 155 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF404Q494X3 552 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ZBTB2Q8N680 514 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 FAM98AQ8NCA5 519 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 DPEP3Q9H4B8 488 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 GDAP2Q9NXN4 497 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 CNTN3Q9P232 1028 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 M0R2N6 131 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 IFNGP01579 166 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ITGA3P26006 1051 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 GLUD2P49448 558 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 NDUFV1P49821 464 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 SMARCB1Q12824 385 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 NAE1Q13564 534 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 PARP15Q460N3 678 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 CHST15Q7LFX5 561 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 TMEM110Q86TL2 294 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 C8orf48Q96LL4 319 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 EBPLQ9BY08 206 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 FZD10Q9ULW2 581 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 CNTNAP1P78357 1384 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 MID1O15344 667 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 ABCB7O75027 752 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 GADD45GO95257 159 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 SMAD3P84022 425 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 IQCCQ4KMZ1 466 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 RELL1Q8IUW5 271 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 PEX5LQ8IYB4 626 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC38A4Q969I6 547 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 MIPEPQ99797 713 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC39A8Q9C0K1 460 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 DSN1Q9H410 356 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TVP23BQ9NYZ1 205 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 A0A1W2PQH9 124 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 ADM5C9JUS6 153 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 M0QX08 132 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 FUT4P22083 530 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 GPR1P46091 355 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 YBEYP58557 167 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 HNRNPDQ14103 355 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 PCLAFQ15004 111 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 MEP1AQ16819 746 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 C9orf64Q5T6V5 341 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 RAET1GQ6H3X3 334 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TP53INP1Q96A56 240 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 MYO19Q96H55 970 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 FBP2O00757 339 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 PRAMEF1O95521 474 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 ANXA8P13928 327 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 PRKCHP24723 683 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TEAD4Q15561 434 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TUBA3EQ6PEY2 450 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 PRR23BQ6ZRT6 265 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 ADGRG6Q86SQ4 1221 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TMEM209Q96SK2 561 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 COL20A1Q9P218 1284 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 GIT1Q9Y2X7 761 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 GLYATL1P3A0A0U1RQE8 302 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 NME6O75414 186 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 SSR2P43308 183 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 STT3AP46977 705 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 CHIT1Q13231 466 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TAF13Q15543 124 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 CAPN13Q6MZZ7 669 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 TMEM126BQ8IUX1 230 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF384Q8TF68 577 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 WRAP73Q9P2S5 460 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 RIPK3Q9Y572 518 aa19.24■□□□□ 0.67
CCDC88B-202ENST00000356786 FOXD2O60548 495 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 ECHS1P30084 290 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 RAPSNQ13702 412 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 TUBA3CQ13748 450 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 STX12Q86Y82 276 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 RBM12BQ8IXT5 1001 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 MARVELD2Q8N4S9 558 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 PLEKHO2Q8TD55 490 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 ERMAPQ96PL5 475 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 CHIAQ9BZP6 476 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 MTIF3Q9H2K0 278 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 EHD1Q9H4M9 534 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 NMUR1Q9HB89 426 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 STARD7Q9NQZ5 370 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 PCDHGC4Q9Y5F7 938 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms