RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TRNP1Q6NT89 227 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 NIPAL1Q6NVV3 410 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CHST15Q7LFX5 561 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 NRSN1Q8IZ57 195 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 OR2T3Q8NH03 318 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CATSPER2Q96P56 530 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 LRMDAQ9H2I8 198 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 NKX2-4Q9H2Z4 354 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PCDH12Q9NPG4 1184 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CACNA2D2Q9NY47 1150 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 WARS2Q9UGM6 360 aaKnown RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TYROBPO43914 113 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 EBLN1P0CF75 366 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CACNA2D1P54289 1103 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CPTPQ5TA50 214 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CDK20Q8IZL9 346 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 GPR150Q8NGU9 434 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 OR2M4Q96R27 311 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM39Q9HCM9 518 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 SEMA3GQ9NS98 782 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ARMCX1Q9P291 453 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TMED5Q9Y3A6 229 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 STON1Q9Y6Q2 735 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ROS1P08922 2347 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TCRBV7S3A2A0A539 114 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TTC36A6NLP5 189 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 HHLA1C9JL84 531 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM38O00635 465 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RFXANKO14593 260 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PAK4O96013 591 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PENKP01210 267 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RRM2P31350 389 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ERVFC1P60507 584 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 HTRA4P83105 476 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TGFBIQ15582 683 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 NCEH1Q6PIU2 408 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TEX26Q8N6G2 289 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF555Q8NEP9 628 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 FAM174AQ8TBP5 190 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 C19orf60Q96EN9 201 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF576Q9H609 170 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RNPEPL1Q9HAU8 725 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 IL1RL2Q9HB29 575 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 THUMPD1Q9NXG2 353 aaKnown RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 KIF17Q9P2E2 1029 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 MAGEL2Q9UJ55 1249 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF232Q9UNY5 417 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PSAT1Q9Y617 370 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RFPL1O75677 317 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 S1PR4O95977 384 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ANXA4P09525 319 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ITGA2P17301 1181 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CDH3P22223 829 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ITGB7P26010 798 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 OXTRP30559 389 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ALDH9A1P49189 494 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 KPNB1Q14974 876 aaKnown RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PTCHD3Q3KNS1 767 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 MANEALQ5VSG8 457 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RIPOR1Q6ZS17 1223 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 FAM124AQ86V42 546 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 HORMAD1Q86X24 394 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 NUDT13Q86X67 352 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 EFCAB3Q8N7B9 438 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TMIEQ8NEW7 156 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ROPN1LQ96C74 230 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PPCDCQ96CD2 204 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 DTNBP1Q96EV8 351 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 LRCH1Q9Y2L9 728 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 SNX13Q9Y5W8 968 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF318Q5VUA4 2279 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 COL4A5P29400 1685 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ERAL1O75616 437 aaKnown RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 APBB3O95704 486 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ACP5P13686 325 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CREB1P16220 341 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 SHMT2P34897 504 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 C21orf59P57076 290 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM115Q12893 351 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CST6Q15828 149 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 IL23RQ5VWK5 629 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 UBE2Q1Q7Z7E8 422 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 GALNT7Q86SF2 657 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM69Q86WT6 500 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ADHFE1Q8IWW8 467 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF366Q8N895 744 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 C11orf65Q8NCR3 313 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 SETD9Q8NE22 299 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 OR2T12Q8NG77 320 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 LPGAT1Q92604 370 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 DNASE1L2Q92874 299 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF382Q96SR6 550 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM45AQ9NWC5 275 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 DNAJC28Q9NX36 388 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 H3BNH8 94 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 UBXN8O00124 270 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 MATN2O00339 956 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ALDOAP04075 364 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 IL6P05231 212 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 FOSL2P15408 326 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms