RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 DHRSXQ8N5I4 330 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TMEM156Q8N614 296 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 WDR55Q9H6Y2 383 aaPredicted RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 PIRO00625 290 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 SNUPNO95149 360 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 MLLT6P55198 1093 aaPredicted RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 ZNF542PQ5EBM4 170 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 ZFP1Q6P2D0 407 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TMC8Q8IU68 726 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RP9Q8TA86 221 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 FAM110BQ8TC76 370 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 SORCS1Q8WY21 1168 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RCN3Q96D15 328 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TCF12Q99081 682 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RC3H2Q9HBD1 1191 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 COPG2Q9UBF2 871 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 IKZF3Q9UKT9 509 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 REXO2Q9Y3B8 237 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 TRIM74Q86UV6 250 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 CCDC103Q8IW40 242 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 GPR151Q8TDV0 419 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 ADGRE2Q9UHX3 823 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 CDH7Q9ULB5 785 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 U3KQV3 271 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TPD52L2O43399 206 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 LEFTY1O75610 366 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 CNTN5O94779 1100 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 EPCAMP16422 314 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 PPIBP23284 216 aaKnown RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 CRHR1P34998 444 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 C1orf61Q13536 156 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 C11orf88Q6PI97 169 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RALGPS2Q86X27 583 aaPredicted RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 KIAA2013Q8IYS2 634 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 NKD2Q969F2 451 aaPredicted RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 OLFM1Q99784 485 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TAPBPLQ9BX59 468 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 SLCO1B3Q9NPD5 702 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 FTSJ1Q9UET6 329 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 M0R2N6 131 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RGS8P57771 180 aaPredicted RBP13.29□□□□□ -0.28
RFFL-201ENST00000315249 BTN3A2P78410 334 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 LGALS3BPQ08380 585 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 COX10Q12887 443 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 ZNF662Q6ZS27 426 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 RACGAP1Q9H0H5 632 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 TELO2Q9Y4R8 837 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 KDM3BQ7LBC6 1761 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 B4GALT2O60909 372 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 ACADSP16219 412 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 IL1R2P27930 398 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 PCYT1AP49585 367 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 CDC42P60953 191 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 RPP38P78345 283 aaKnown RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 PPIDQ08752 370 aaKnown RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 RUNX3Q13761 415 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 RTP2Q5QGT7 225 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 FAM3CQ92520 227 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 TRMOQ9BU70 441 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.28□□□□□ -0.287e-7■□□□□ 9.5
RFFL-201ENST00000315249 SLX4Q8IY92 1834 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 LDB2O43679 373 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 PIM1P11309 404 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 POLR2JP52435 117 aaKnown RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 GDF10P55107 478 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SLC35G1Q2M3R5 365 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SVOPQ8N4V2 548 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 KAT2AQ92830 837 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SLC24A3Q9HC58 644 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 CORO1CQ9ULV4 474 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 PCDHGA11Q9Y5H2 935 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 DGKBQ9Y6T7 804 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 KMOO15229 486 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 DLGAP3O95886 979 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 MAGEA11P43364 429 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 KCNJ5P48544 419 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 PRRT3Q5FWE3 981 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 PRAMEF14Q5SWL7 426 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 PRAMEF13Q5VWM6 474 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 NCBP2-AS2Q69YL0 99 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 JAZF1Q86VZ6 243 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 AADATQ8N5Z0 425 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 METTL27Q8N6F8 245 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 RORBQ92753 470 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SLC47A1Q96FL8 570 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SPRTNQ9H040 489 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 SIX4Q9UIU6 781 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SH3GLB1Q9Y371 365 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 GRXCR1A8MXD5 290 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 GRID2O43424 1007 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 RFTN2Q52LD8 501 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 TBC1D23Q9NUY8 699 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 LAMB4A4D0S4 1761 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 SLC7A4O43246 635 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 GK5Q6ZS86 529 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 TFGQ92734 400 aaPredicted RBP13.28□□□□□ -0.28
RFFL-201ENST00000315249 MR1Q95460 341 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 FCRL5Q96RD9 977 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 ADAP2Q9NPF8 381 aa13.28□□□□□ -0.28
RFFL-201ENST00000315249 TAC3Q9UHF0 121 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms