RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MYDGFQ969H8 173 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 NXNL1Q96CM4 212 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 MYRFLQ96LU7 910 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 OSBPL2Q9H1P3 480 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SEC14L4Q9UDX3 406 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PCDHB3Q9Y5E6 796 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ARNTLO00327 626 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SERPINB7O75635 380 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 TIE1P35590 1138 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 MNDAP41218 407 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RAB5BP61020 215 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 LCP2Q13094 533 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CDH18Q13634 790 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 UBXN11Q5T124 520 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 C10orf62Q5T681 223 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 DNAJC14Q6Y2X3 702 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 FAM83HQ6ZRV2 1179 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 CUZD1Q86UP6 607 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CENPSQ8N2Z9 138 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 OR13F1Q8NGS4 319 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 L3HYPDHQ96EM0 354 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 TRIB3Q96RU7 358 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 KAT8Q9H7Z6 458 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 TRAF6Q9Y4K3 522 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PCDHGB1Q9Y5G3 927 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 C12orf71A8MTZ7 269 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 FAM47E-STBD1D6RA91 191 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 KCNK1O00180 336 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 MEN1O00255 615 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 FBP2O00757 339 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PER2O15055 1255 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 NUDT14O95848 222 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CYP4B1P13584 511 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RGS4P49798 205 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SULT1E1P49888 294 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 LAMTOR4Q0VGL1 99 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 E2F2Q14209 437 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SPCS2Q15005 226 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 DCLRE1AQ6PJP8 1040 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 AMIGO2Q86SJ2 522 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 EFCAB3Q8N7B9 438 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 KDM1BQ8NB78 822 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 TBC1D20Q96BZ9 403 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ZNF641Q96N77 438 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 GAL3ST1Q99999 423 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 COQ10BQ9H8M1 238 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 TAS2R13Q9NYV9 303 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SPATA7Q9P0W8 599 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CBY1Q9Y3M2 126 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 OAS3Q9Y6K5 1087 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 IRGMA1A4Y4 181 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 FAM234BA2RU67 622 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 FAM149AA5PLN7 773 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 H3BSA7 217 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 C1QAP02745 245 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 GRK4P32298 578 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RFC2P35250 354 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SLC7A2P52569 658 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PFKPQ01813 784 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 GALNT2Q10471 571 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RPA4Q13156 261 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SCGB2A2Q13296 93 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SMTNL2Q2TAL5 461 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 HSD17B12Q53GQ0 312 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 INO80DQ53TQ3 878 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 RNF165Q6ZSG1 346 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ARMC8Q8IUR7 673 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ZNF567Q8N184 647 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 IPMKQ8NFU5 416 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ACER1Q8TDN7 264 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 THRSPQ92748 146 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 REXO5Q96IC2 774 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 METTL2AQ96IZ6 378 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 SPATA9Q9BWV2 254 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CDT1Q9H211 546 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PAK1IP1Q9NWT1 392 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 TMEM181Q9P2C4 612 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PDE10AQ9Y233 779 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 GSAPA4D1B5 854 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ZNF705GA8MUZ8 300 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 SDHDO14521 159 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 STAG3L1P0CL83 205 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SLC2A4P14672 509 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 GNB3P16520 340 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 IL1R2P27930 398 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 UQCRC1P31930 480 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ELP6Q0PNE2 266 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SELPLGQ14242 412 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CLCA4Q14CN2 919 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SLC36A3Q495N2 470 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 CRTC3Q6UUV7 619 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SNX20Q7Z614 316 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 KLHDC8BQ8IXV7 354 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PHTF2Q8N3S3 785 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ITCHQ96J02 903 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 PRMT6Q96LA8 375 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 FEM1AQ9BSK4 669 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RC3H2Q9HBD1 1191 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 CREBZFQ9NS37 354 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 DTLQ9NZJ0 730 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms