RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 MEGF6O75095 1541 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 M0QZK8 103 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 GGCTO75223 188 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PTPN3P26045 913 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 HOXD10P28358 340 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CLK3P49761 638 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MERTKQ12866 999 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RPA4Q13156 261 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 BAK1Q16611 211 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 OGFRL1Q5TC84 451 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 NRROSQ86YC3 692 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PCSK9Q8NBP7 692 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 COQ8AQ8NI60 647 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ART4Q93070 314 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ATXN7L3BQ96GX2 97 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC45A3Q96JT2 553 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FUZQ9BT04 418 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZNHIT2Q9UHR6 403 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FEM1BQ9UK73 627 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RIF1Q5UIP0 2472 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 A0A0A6YYH2 397 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 A6NJ64 397 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RFPL3O75679 317 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RNASEH2AO75792 299 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 DFFBO76075 338 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC34A2O95436 690 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 AP2A1O95782 977 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CYP17A1P05093 508 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC26A2P50443 739 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PEX3P56589 373 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RAP2BP61225 183 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ACSM2AQ08AH3 577 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF460Q14592 562 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZIK1Q3SY52 487 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ACSM2BQ68CK6 577 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 NSMFQ6X4W1 530 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 LARP4Q71RC2 724 aaKnown RBP eCLIP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RANBP3LQ86VV4 465 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 LPAR1Q92633 364 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TBL1YQ9BQ87 522 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PCDHA11Q9Y5I1 949 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PCDHA10Q9Y5I2 948 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ADAMTS12P58397 1594 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 KERAO60938 352 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF821O75541 412 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 BEST1O76090 585 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SERPINA4P29622 427 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SCNN1GP51170 649 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RAB30Q15771 203 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 AGMOQ6ZNB7 445 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 GAREM2Q75VX8 874 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 NOXA1Q86UR1 476 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 EID2Q8N6I1 236 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ELP5Q8TE02 316 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 OTUD7AQ8TE49 926 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RSC1A1Q92681 617 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLCO2A1Q92959 643 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TRIM43Q96BQ3 446 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZDHHC5Q9C0B5 715 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 AP5M1Q9H0R1 490 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RAB9BQ9NP90 201 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF446Q9NWS9 450 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 DMRT2Q9Y5R5 561 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TPT1P13693 172 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CHRM3P20309 590 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 EIF4BP23588 611 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SCNN1BP51168 640 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 HTRA4P83105 476 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FAM83HQ6ZRV2 1179 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ARMC10Q8N2F6 343 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SCRN2Q96FV2 425 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM246Q9BRR3 403 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MED18Q9BUE0 208 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ITPAQ9BY32 194 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 RHOJQ9H4E5 214 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TPT1P8Q9HAU6 139 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SMCO4Q9NRQ5 59 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CFAP97Q9P2B7 532 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 LAMP5Q9UJQ1 280 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MOXD2PA6NHM9 499 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 APOC3P02656 99 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 POLR2CP19387 275 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 DNASE1P24855 282 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TAS2R41P59536 307 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 OVGP1Q12889 678 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 BMPR2Q13873 1038 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PUM1Q14671 1186 aaKnown RBP eCLIP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TAF13Q15543 124 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM41BQ5BJD5 291 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 DNM1P34Q6PK57 102 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PRSS55Q6UWB4 352 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MFSD7Q6UXD7 560 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TRIM46Q7Z4K8 759 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZBTB33Q86T24 672 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC34A3Q8N130 599 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 GPKOWQ92917 476 aaPredicted RBP eCLIP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FNDC11Q9BVV2 318 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PCED1AQ9H1Q7 454 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 HOXC10Q9NYD6 342 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ERVK-19Q9WJR5 959 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms