RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 MC1RQ01726 317 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KCNC4Q03721 635 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 CDC20Q12834 499 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KCNAB2Q13303 367 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KLF1Q13351 362 aaPredicted RBP9.49□□□□□ -0.89
VPS41-201ENST00000265745 KCNAB1Q14722 419 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 GPR33Q49SQ1 333 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 CAPRIN2Q6IMN6 1127 aaKnown RBP9.49□□□□□ -0.89
VPS41-201ENST00000265745 ATG14Q6ZNE5 492 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 SNX20Q7Z614 316 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KIAA1328Q86T90 577 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 PPP1R3BQ86XI6 285 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KMT5CQ86Y97 462 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 TMEM139Q8IV31 216 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 RASGRP3Q8IV61 690 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 CFAP206Q8IYR0 622 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 NXPE1Q8N323 547 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 LILRA3Q8N6C8 439 aaPredicted RBP9.49□□□□□ -0.89
VPS41-201ENST00000265745 ULK4Q96C45 1275 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 RNF31Q96EP0 1072 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 DCUN1D1Q96GG9 259 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 C12orf66Q96MD2 445 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 FCRL4Q96PJ5 515 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 COPS8Q99627 209 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 FAM96AQ9H5X1 160 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 KIR3DX1Q9H7L2 352 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 PDE7BQ9NP56 450 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 HRASLS2Q9NWW9 162 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 EGFL7Q9UHF1 273 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 SLC24A2Q9UI40 661 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 CRLS1Q9UJA2 301 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 PADI1Q9ULC6 663 aa9.49□□□□□ -0.89
VPS41-201ENST00000265745 PACSIN2Q9UNF0 486 aaPredicted RBP9.49□□□□□ -0.89
VPS41-201ENST00000265745 SDK2Q58EX2 2172 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 SCN8AQ9UQD0 1980 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 IGLV3-16A0A075B6K0 115 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 TRBV5-4A0A0C4DH59 114 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 A0A0U1RQJ8 604 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 C17orf113A0A1B0GUU1 675 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 TCRBV7S2A1N4TA0A589 114 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 OR6C74A6NCV1 312 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 GOLGA6L9A6NEM1 432 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 MIF4GDA9UHW6 222 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 H7C0S8 307 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CCL22O00626 93 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 TIAF1O95411 115 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 FTCDO95954 541 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 SLC35G4P0C7Q5 338 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 TPH1P17752 444 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 DLSTP36957 453 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 PRLHRP49683 370 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CDKN1CP49918 316 aaPredicted RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 CSRP3P50461 194 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 GDF10P55107 478 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 HSD11B2P80365 405 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 ACY1Q03154 408 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 KIF5AQ12840 1032 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 TUBB3Q13509 450 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 PLCL1Q15111 1095 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 DEFB109BQ30KR1 87 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 ZNF658BQ4V348 819 aaPredicted RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 DNTTIP2Q5QJE6 756 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 ATP1A1-AS1Q5TC04 95 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 PWWP2BQ6NUJ5 590 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CYB5D1Q6P9G0 228 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CERS6Q6ZMG9 384 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 ARHGEF18Q6ZSZ5 1173 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 SYCE1Q8N0S2 351 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 D2HGDHQ8N465 521 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 UBL4BQ8N7F7 174 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 SIDT2Q8NBJ9 832 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 SLC35B2Q8TB61 432 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 HEXDCQ8WVB3 486 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 APOBEC4Q8WW27 367 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 STAMBPL1Q96FJ0 436 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 DNAJC1Q96KC8 554 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 RMDN2Q96LZ7 410 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CD180Q99467 661 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CCM2Q9BSQ5 444 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 FGF21Q9NSA1 209 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 ZDHHC3Q9NYG2 299 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 FAM8A1Q9UBU6 413 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 LNPEPQ9UIQ6 1025 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 CROTQ9UKG9 612 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 RARRES3Q9UL19 164 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 R3HDM2Q9Y2K5 976 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 MRPS18BQ9Y676 258 aaKnown RBP9.48□□□□□ -0.89
VPS41-201ENST00000265745 COLEC10Q9Y6Z7 277 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 BOD1L1Q8NFC6 3051 aa9.48□□□□□ -0.89
VPS41-201ENST00000265745 UBA6A0AVT1 1052 aaPredicted RBP9.47□□□□□ -0.89
VPS41-201ENST00000265745 TLCD2A6NGC4 264 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 RECKO95980 971 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 MT-ND3P03897 115 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 PTMAP06454 111 aaKnown RBP9.47□□□□□ -0.89
VPS41-201ENST00000265745 EBLN1P0CF75 366 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 PSMA3P25788 255 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 NDUFS1P28331 727 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 MC4RP32245 332 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 ARL4DP49703 201 aa9.47□□□□□ -0.89
VPS41-201ENST00000265745 TUBB4BP68371 445 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms