RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 NEURL2Q9BR09 285 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 PARVBQ9HBI1 364 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ATP13A1Q9HD20 1204 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 EXOSC4Q9NPD3 245 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 XIRP2A4UGR9 3374 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 LOC100130705A0A1B0GUX0 176 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 MYADML2A6NDP7 307 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 A8MV72 311 aaPredicted RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 KERAO60938 352 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ALPIP09923 528 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 PKMP14618 531 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 FDXRP22570 491 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 GTF2E2P29084 291 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 GKP32189 559 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 MAGEA8P43361 318 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 EPS8Q12929 822 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 NPTX1Q15818 432 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CYP27C1Q4G0S4 372 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 BRMS1LQ5PSV4 323 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 Q6ZPB1 254 aaPredicted RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CCDC97Q96F63 343 aaPredicted RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 EBPLQ9BY08 206 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 UGT2B28Q9BY64 529 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 REXO4Q9GZR2 422 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 SCUBE2Q9NQ36 999 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ZNF225Q9UK10 706 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 POU2F3Q9UKI9 436 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 SARDHQ9UL12 918 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ERGIC3Q9Y282 383 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 GMPPBQ9Y5P6 360 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CXCR6O00574 342 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CRHBPP24387 322 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 RPL34P49207 117 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ARHGDIAP52565 204 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 HUNKP57058 714 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ZXDBP98169 803 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 RCAN2Q14206 197 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 MAPRE1Q15691 268 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 NKG7Q16617 165 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 LRRC73Q5JTD7 316 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ZCCHC8Q6NZY4 707 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ZNF621Q6ZSS3 439 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 C11orf74Q86VG3 221 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 HORMAD1Q86X24 394 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 DENND1CQ8IV53 801 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 RNF175Q8N4F7 328 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 OR13F1Q8NGS4 319 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 UTP15Q8TED0 518 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 STON2Q8WXE9 905 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 BRI3BPQ8WY22 251 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 L3HYPDHQ96EM0 354 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 BARD1Q99728 777 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 AMBRA1Q9C0C7 1298 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 TUBA8Q9NY65 449 aaPredicted RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 MAGEL2Q9UJ55 1249 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 PADI3Q9ULW8 664 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ELOVL7A1L3X0 281 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 PABPN1LA6NDY0 278 aaKnown RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 TTC36A6NLP5 189 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 M0R129 80 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 RGS5O15539 181 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 CNOT3O75175 753 aaKnown RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 CDH1P12830 882 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 POU2F1P14859 743 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 CDC42EP1Q00587 391 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 COL9A2Q14055 689 aaPredicted RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 SF1Q15637 639 aaKnown RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 UAP1L1Q3KQV9 507 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 GPR153Q6NV75 609 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 Q6ZSR9 355 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 SPRED1Q7Z699 444 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 ATP6V0D2Q8N8Y2 350 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 SLC13A3Q8WWT9 602 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 UHRF1Q96T88 793 aaPredicted RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 ASPSCR1Q9BZE9 553 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 NDEL1Q9GZM8 345 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 NTN4Q9HB63 628 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 EIF3LQ9Y262 564 aaKnown RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 PCDHGA4Q9Y5G9 962 aa11.77□□□□□ -0.52
USHBP1-201ENST00000252597 RANBP2P49792 3224 aaKnown RBP11.77□□□□□ -0.52
USHBP1-201ENST00000252597 GLUD1P00367 558 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 F2P00734 622 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 BMP1P13497 986 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 IGFBP5P24593 272 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 POU1F1P28069 291 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 NR4A2P43354 598 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 MSANTD2Q6P1R3 559 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 NANOGNBQ7Z5D8 188 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF280BQ86YH2 543 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF420Q8TAQ5 688 aaPredicted RBP11.77□□□□□ -0.53
USHBP1-201ENST00000252597 BRSK1Q8TDC3 778 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 KIAA1191Q96A73 305 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 ZHX1-C8orf76Q96EF9 292 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 SH3YL1Q96HL8 342 aaPredicted RBP11.77□□□□□ -0.53
USHBP1-201ENST00000252597 NSMCE3Q96MG7 304 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 CIPCQ9C0C6 399 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 GKN1Q9NS71 199 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 SCN3BQ9NY72 215 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 ABCD2Q9UBJ2 740 aa11.77□□□□□ -0.53
USHBP1-201ENST00000252597 C3orf18Q9UK00 162 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms