RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PRKCZQ05513 592 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 GRSF1Q12849 480 aaKnown RBP eCLIP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 MAD2L1Q13257 205 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 PTGR1Q14914 329 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 MAPKAPK3Q16644 382 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 PLA2G4EQ3MJ16 856 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 OR10A6Q8NH74 314 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 PPP1R14BQ96C90 147 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 APOL5Q9BWW9 433 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 CWH43Q9H720 699 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 GKN1Q9NS71 199 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 DNAAF2Q9NVR5 837 aaKnown RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ADGRE2Q9UHX3 823 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 PCDHB7Q9Y5E2 793 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ZNF840PA6NDX5 716 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CST1P01037 141 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 COL6A1P12109 1028 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CTPS1P17812 591 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 MAP4P27816 1152 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 POLR2IP36954 125 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GATMP50440 423 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 ACLYP53396 1101 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 RHOAP61586 193 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CYP4F3Q08477 520 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 ELAVL2Q12926 359 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 FAM174BQ3ZCQ3 159 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 ADGRF1Q5T601 910 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TTC23Q5W5X9 447 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CXorf57Q6NSI4 855 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 PRSS55Q6UWB4 352 aaPredicted RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 ENPP6Q6UWR7 440 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 FAM151BQ6UXP7 276 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 RNF180Q86T96 592 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 BORCS5Q969J3 196 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 AURKBQ96GD4 344 aaPredicted RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 RDH12Q96NR8 316 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 FAM126AQ9BYI3 521 aaPredicted RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 PAIP1Q9H074 479 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TOR3AQ9H497 397 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 HPS4Q9NQG7 708 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 HCSTQ9UBK5 93 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 DNAJB9Q9UBS3 223 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 NEUROG3Q9Y4Z2 214 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GNGT2O14610 69 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 FFAR3O14843 346 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GPR42O15529 346 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GLUD1P00367 558 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CCNA2P20248 432 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 HMGCLP35914 325 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TMBIM6P55061 237 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 KIAA0040Q15053 153 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 RBM48Q5RL73 367 aaKnown RBP18.39■□□□□ 0.53
CPSF3-201ENST00000238112 SULT1C3Q6IMI6 304 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 FAM86B1Q8N7N1 296 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TBC1D15Q8TC07 691 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GTF2H4Q92759 462 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 SLC47A1Q96FL8 570 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TTPALQ9BTX7 342 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 DPY30Q9C005 99 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 WWOXQ9NZC7 414 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 GNPTGQ9UJJ9 305 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 CCL27Q9Y4X3 112 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 OARD1Q9Y530 152 aa18.39■□□□□ 0.53
CPSF3-201ENST00000238112 TRIM64BA6NI03 449 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CD160O95971 181 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 JUNBP17275 347 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 MATN1P21941 496 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 PIK3CGP48736 1102 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 EPS8Q12929 822 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 IMPG1Q17R60 797 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CACHD1Q5VU97 1274 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 RGMBQ6NW40 437 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 NECAB2Q7Z6G3 386 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 SERPINA9Q86WD7 417 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CARNMT1Q8N4J0 409 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF548Q8NEK5 533 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF555Q8NEP9 628 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 FAM162AQ96A26 154 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 SH3GL1Q99961 368 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CARS2Q9HA77 564 aaKnown RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ELOVL2Q9NXB9 296 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 LMCD1Q9NZU5 365 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 OPTCQ9UBM4 332 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 LHX3Q9UBR4 397 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 SLC28A1O00337 649 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 TAPBPO15533 448 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ABCB7O75027 752 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 PRAMEF1O95521 474 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 PRAMEF12O95522 483 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ALPIP09923 528 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CD247P20963 164 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 MAPK10P53779 464 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CBX2Q14781 532 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF829Q3KNS6 432 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 DNAJC14Q6Y2X3 702 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 TAS1R1Q7RTX1 841 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 RBFAQ8N0V3 343 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 SMYD1Q8NB12 490 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 GLB1L3Q8NCI6 653 aaPredicted RBP18.38■□□□□ 0.53
CPSF3-201ENST00000238112 OVCA2Q8WZ82 227 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms