RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 PRKAA2P54646 552 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RPL6Q02878 288 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ASPHQ12797 758 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 CNTN1Q12860 1018 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ACOX1Q15067 660 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SPRED3Q2MJR0 410 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ZNF284Q2VY69 593 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 MACC1Q6ZN28 852 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ERN2Q76MJ5 926 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RAVER1Q8IY67 606 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 NKAPQ8N5F7 415 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 DTX3LQ8TDB6 740 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 EEF1AKMT1Q8WVE0 214 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RAB7BQ96AH8 199 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ATOH8Q96SQ7 321 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 COPS8Q99627 209 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ZSCAN5AQ9BUG6 496 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 WRAP53Q9BUR4 548 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RIOK2Q9BVS4 552 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TRIM55Q9BYV6 548 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 DERL2Q9GZP9 239 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ALG9Q9H6U8 611 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 NPHS2Q9NP85 383 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TMEM74BQ9NUR3 256 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ZDHHC3Q9NYG2 299 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 KLHL14Q9P2G3 628 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SUSD2Q9UGT4 822 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 A0A1W2PQF6 199 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 A8MT66 165 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 WNT9AO14904 365 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 TGDSO95455 350 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CFIP05156 583 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CHRNGP07510 517 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 SLC1A6P48664 564 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 HNRNPH2P55795 449 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 ATP6V0D1P61421 351 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 SIM1P81133 766 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 GPRC6AQ5T6X5 926 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 AGBL4Q5VU57 503 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 LIPMQ5VYY2 423 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 ARMCX6Q7L4S7 300 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 MAVSQ7Z434 540 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CACUL1Q86Y37 369 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CRLF3Q8IUI8 442 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CPNE9Q8IYJ1 553 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 NRSN1Q8IZ57 195 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 LSMEM2Q8N112 164 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 TRAM1L1Q8N609 369 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 PPP4R1Q8TF05 950 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 FOXJ1Q92949 421 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CCDC126Q96EE4 140 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 DTD2Q96FN9 168 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 TMEM237Q96Q45 408 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 GABRG3Q99928 467 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 PLCD4Q9BRC7 762 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 HDAC8Q9BY41 377 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 ZDHHC5Q9C0B5 715 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 MKRN2Q9H000 416 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CAPN10Q9HC96 672 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 SARS2Q9NP81 518 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 ABCF3Q9NUQ8 709 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 CNOT6Q9ULM6 557 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 ARL2BPQ9Y2Y0 163 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 DHRS7Q9Y394 339 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 TNRC6BQ9UPQ9 1833 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM208BQ5VWN6 2430 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 PCNX2A6NKB5 2137 aa9.35□□□□□ -0.91
PDLIM5-223ENST00000627587 F8W8V4 182 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 K7ESM1 405 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 CDC7O00311 574 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ARHGAP33O14559 1287 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ZNF195O14628 629 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 MID1O15344 667 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 MTX2O75431 263 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ADH1BP00325 375 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 C6P13671 934 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 HOXB2P14652 356 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 GNSP15586 552 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ITPKAP23677 461 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ATP5F1P24539 256 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 NAGLUP54802 743 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 IL2P60568 153 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ABCE1P61221 599 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 CCDC15Q0P6D6 951 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 STARD3Q14849 445 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 TSNQ15631 228 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 CST6Q15828 149 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 TMEM52BQ4KMG9 183 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 WDR45BQ5MNZ6 344 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ZNF648Q5T619 568 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 RPS27LQ71UM5 84 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 RHEBL1Q8TAI7 183 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 ZCCHC14Q8WYQ9 949 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 KIAA1191Q96A73 305 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM131CQ96AQ9 280 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 AP2M1Q96CW1 435 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 GTPBP2Q9BX10 602 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 KRTAP3-3Q9BYR6 98 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 KRTAP3-2Q9BYR7 98 aa9.34□□□□□ -0.91
PDLIM5-223ENST00000627587 SLC6A17Q9H1V8 727 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms