RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ELMO1Q92556 727 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 FOXP3Q9BZS1 431 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 WWP1Q9H0M0 922 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 OR52A5Q9H2C5 316 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 GNPTGQ9UJJ9 305 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 FBXO5Q9UKT4 447 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 LIN7AO14910 233 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 HYAL3O43820 417 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC35G4P0C7Q5 338 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 ITGB6P18564 788 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PDHA2P29803 388 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 FMO4P31512 558 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CCR7P32248 378 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 GPR3P46089 330 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 RPA4Q13156 261 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 RPE65Q16518 533 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 NAPRTQ6XQN6 538 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 KRT222Q8N1A0 295 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 GSDMBQ8TAX9 411 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 INSM2Q96T92 566 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 TSSK1BQ9BXA7 367 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 STN1Q9H668 368 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 FBXO6Q9NRD1 293 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 POT1Q9NUX5 634 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 MOCS1Q9NZB8 636 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PCDHB1Q9Y5F3 818 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PTPRBP23467 1997 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 A0A1W2PQM1 296 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC5A10A0PJK1 596 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 B4GAT1O43505 415 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 VIPP01282 170 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 ESR1P03372 595 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 RPLP0P05388 317 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 ALDH4A1P30038 563 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PREPP48147 710 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CCL7P80098 99 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 MPP1Q00013 466 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 BOP1Q14137 746 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 BRD3Q15059 726 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 HES3Q5TGS1 186 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CDCP2Q5VXM1 449 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CAPRIN2Q6IMN6 1127 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 TMPRSS7Q7RTY8 843 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CCDC25Q86WR0 208 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 ZNF761Q86XN6 746 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 TRIM48Q8IWZ4 208 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 C2CD4AQ8NCU7 369 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 GABPB2Q8TAK5 448 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 SH3KBP1Q96B97 665 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CXorf40BQ96DE9 158 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 RMDN2Q96LZ7 410 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PANX3Q96QZ0 392 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 FAM129AQ9BZQ8 928 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 LRRN3Q9H3W5 708 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC40A1Q9NP59 571 aa16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 PPANQ9NQ55 473 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 CFAP20Q9Y6A4 193 aaKnown RBP16.19■□□□□ 0.18
CCDC28A-202ENST00000611852 KNTC1P50748 2209 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 UNC13CQ8NB66 2214 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 PRAMEF33A0A0G2JMD5 474 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 H3BMM5 538 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 NTN3O00634 580 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 HAUS5O94927 633 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 MTHFD1P11586 935 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 PKMP14618 531 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 AOAHP28039 575 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 LEPRP48357 1165 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 CARSP49589 748 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 OR1D5P58170 312 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 PLOD1Q02809 727 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 TEDDM1Q5T9Z0 273 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 ZNF449Q6P9G9 518 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 TMPRSS12Q86WS5 348 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 PALM2Q8IXS6 379 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 GALNT15Q8N3T1 639 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 WDR48Q8TAF3 677 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 IFT81Q8WYA0 676 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 C12orf66Q96MD2 445 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC38A3Q99624 504 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 UCK1Q9HA47 277 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 IMP3Q9NV31 184 aaKnown RBP16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC17A6Q9P2U8 582 aa16.18■□□□□ 0.18
CCDC28A-202ENST00000611852 ZW10O43264 779 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 NIPSNAP2O75323 286 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 GPC4O75487 556 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 MT-CO3P00414 261 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 RHOXF2BP0C7M4 288 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 GABRB3P28472 473 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 ECHS1P30084 290 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 SSTR1P30872 391 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 MAGEA4P43358 317 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 CD151P48509 253 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 HSPA14Q0VDF9 509 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 SYTL3Q4VX76 610 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 ZNF549Q6P9A3 640 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 CNSTQ6PJW8 725 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 CAPN12Q6ZSI9 719 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 KIAA0408Q6ZU52 694 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 TMEM26Q6ZUK4 368 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms