RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OBP2BQ9NPH6 170 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 XPNPEP1Q9NQW7 623 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 PRMT7Q9NVM4 692 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 WWOXQ9NZC7 414 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 GPR34Q9UPC5 381 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 LRP12Q9Y561 859 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 MAGED1Q9Y5V3 778 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CPQQ9Y646 472 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF469Q96JG9 3925 aaPredicted RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LY6G6EA0A0G2JKS1 128 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 A0A1W2PPL8 197 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SYNDIG1LA6NDD5 238 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PABPN1LA6NDY0 278 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SMCO2A6NFE2 343 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LGALS16A8MUM7 142 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 B9A039 149 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 HIP1O00291 1037 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 QSOX1O00391 747 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ACKR2O00590 384 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SGTAO43765 313 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 DUX1O43812 170 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 MTA2O94776 668 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ATP1A3P13637 1013 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 COX6B1P14854 86 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LIFP15018 202 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 DGKAP23743 735 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ITGA3P26006 1051 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 UBA7P41226 1012 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 STAT1P42224 750 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LIFRP42702 1097 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PDE6CP51160 858 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 DSC2Q02487 901 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF177Q13360 481 aaPredicted RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PTK2BQ14289 1009 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SPARCL1Q14515 664 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 MEA1Q16626 185 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 DCAF4L1Q3SXM0 396 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 C3orf36Q3SXR2 165 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 NADK2Q4G0N4 442 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ZRANB3Q5FWF4 1079 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 RBM20Q5T481 1227 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 CFAP58Q5T655 872 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 TMEM198Q66K66 360 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 GUSBP11Q6P575 273 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 DSG4Q86SJ6 1040 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 TMEM25Q86YD3 366 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 TGIF2LYQ8IUE0 185 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 CCDC13Q8IYE1 715 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 TXLNBQ8N3L3 684 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 FSIP1Q8NA03 581 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ATP11CQ8NB49 1132 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ZMIZ2Q8NF64 920 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SPPL2BQ8TCT7 592 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 UCMAQ8WVF2 138 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SCAMP4Q969E2 229 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 MUL1Q969V5 352 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ATP6V1E2Q96A05 226 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 FAM136AQ96C01 138 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 HVCN1Q96D96 273 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 HDAC11Q96DB2 347 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 MTFMTQ96DP5 389 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 P2RY11Q96G91 374 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SERAC1Q96JX3 654 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 LZTS2Q9BRK4 669 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PYM1Q9BRP8 204 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 NFKBIZQ9BYH8 718 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ZCWPW1Q9H0M4 648 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 TBC1D14Q9P2M4 693 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 MYO1AQ9UBC5 1043 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 AASSQ9UDR5 926 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 SLC39A10Q9ULF5 831 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PCDHA13Q9Y5I0 950 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 U3KQA8 63 aa4.41□□□□□ -1.7
LINC00540-201ENST00000611481 PRRC2AP48634 2157 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 FLNAP21333 2647 aaKnown RBP4.41□□□□□ -1.7
LINC00540-201ENST00000611481 ANAPC1Q9H1A4 1944 aa4.4□□□□□ -1.7
LINC00540-201ENST00000611481 RP1P56715 2156 aa4.4□□□□□ -1.7
LINC00540-201ENST00000611481 IGKV2D-30A0A075B6S6 120 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC196A0A1B0GTZ2 297 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 TARSL2A2RTX5 802 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 NEDD8-MDP1E9PL57 170 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 F8W8V4 182 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 MKRN2OSH3BPM6 223 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PSMD10O75832 226 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 NOL4O94818 638 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 EDN1P05305 212 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 GIMD1P0DJR0 217 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ALPPL2P10696 532 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 KCNE1P15382 129 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 RXRAP19793 462 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ITIH1P19827 911 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 TYMPP19971 482 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ITGALP20701 1170 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PRKCHP24723 683 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 SLC7A1P30825 629 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 YWHABP31946 246 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ARL2P36404 184 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms