RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, human

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-205	ENST00000598209	DUS1L	Q6P1R4	473 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	WDR74	Q6RFH5	385 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	IGF2-AS	Q6U949	168 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	PCGF5	Q86SE9	256 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	JAML	Q86YT9	394 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	OTUD6B	Q8N6M0	293 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	RCBTB1	Q8NDN9	531 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	TMEM159	Q96B96	161 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	CMKLR1	Q99788	373 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	ASCL3	Q9NQ33	180 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	OGFR	Q9NZT2	677 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	RAX	Q9Y2V3	346 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	LOXL2	Q9Y4K0	774 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	USP24	Q9UPU5	2620 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	FREM2	Q5SZK8	3169 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	FAM237B	A0A1B0GVD1	139 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	MAGEB16	A2A368	324 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209		F8W8V4	182 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TTI1	O43156	1089 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	UBXN7	O94888	489 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TNFSF15	O95150	251 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	FTH1	P02794	183 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	HGF	P14210	728 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TYRP1	P17643	537 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	AMD1	P17707	334 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	PAM	P19021	973 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	IVD	P26440	423 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	PDHA2	P29803	388 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	PREP	P48147	710 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TTPA	P49638	278 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	RPA4	Q13156	261 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TRA2A	Q13595	282 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	SNAP47	Q5SQN1	464 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	ZNF449	Q6P9G9	518 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	ELMO1	Q92556	727 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	FGF11	Q92914	225 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	ZNF669	Q96BR6	464 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	ZNF578	Q96N58	590 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	SLC46A1	Q96NT5	459 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	FCRL3	Q96P31	734 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TRIM56	Q9BRZ2	755 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	TRIM51	Q9BSJ1	452 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	OR52A5	Q9H2C5	316 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	THSD1	Q9NS62	852 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	AKAP7	Q9P0M2	348 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	PDP2	Q9P2J9	529 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209	MAD1L1	Q9Y6D9	718 aa		13.54	□□□□□ -0.24
UPF1-205	ENST00000598209		A8MU76	341 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	GOLGA8K	D6RF30	607 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	GOLGA8T	H3BQL2	631 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	IFRD1	O00458	451 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	PRMT5	O14744	637 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	LIN7A	O14910	233 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	HGS	O14964	777 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	NDUFS3	O75489	264 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ITGA2B	P08514	1039 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	JMJD7	P0C870	316 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ITGB6	P18564	788 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ITIH1	P19827	911 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	MLLT3	P42568	568 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ARCN1	P48444	511 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ERVPABLB-1	P60509	514 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	DHX34	Q14147	1143 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	PLCL1	Q15111	1095 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	ANKRD20A4	Q4UJ75	823 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	MRNIP	Q6NTE8	343 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	HOOK3	Q86VS8	718 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	PLXDC1	Q8IUK5	500 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	AGGF1	Q8N302	714 aa	eCLIP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	SNIP1	Q8TAD8	396 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	JPH3	Q8WXH2	748 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	RSC1A1	Q92681	617 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	SIGLEC10	Q96LC7	697 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	KRT12	Q99456	494 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	PISD	Q9UG56	409 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	HEBP2	Q9Y5Z4	205 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	RPS6KL1	Q9Y6S9	549 aa		13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	MN1	Q10571	1320 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-205	ENST00000598209	CDRT15L2	A8MXV6	281 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	CSTF2	P33240	577 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	ETV5	P41161	510 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	CAPZB	P47756	277 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	CD151	P48509	253 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	GFER	P55789	205 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	BOP1	Q14137	746 aa	Known RBP	13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	KRT33B	Q14525	404 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	MORF4L2	Q15014	288 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	BRD3	Q15059	726 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	SYTL3	Q4VX76	610 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	NAPRT	Q6XQN6	538 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	TMEM135	Q86UB9	458 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	PDZD3	Q86UT5	571 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	AGBL5	Q8NDL9	886 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	SPATA4	Q8NEY3	305 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	LKAAEAR1	Q8TD35	194 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	ZFPM2	Q8WW38	1151 aa		13.52	□□□□□ -0.25
UPF1-205	ENST00000598209	STAMBPL1	Q96FJ0	436 aa		13.52	□□□□□ -0.25

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