RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 RPA4Q13156 261 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 FRG1Q14331 258 aaKnown RBP14.06□□□□□ -0.16
LIG1-208ENST00000595758 CLCA4Q14CN2 919 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 RPE65Q16518 533 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 SYTL3Q4VX76 610 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 ZNF789Q5FWF6 425 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.06□□□□□ -0.16
LIG1-208ENST00000595758 XKR5Q6UX68 686 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 PALM2Q8IXS6 379 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 IFT81Q8WYA0 676 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 CXorf40BQ96DE9 158 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 BIRC8Q96P09 236 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 SLC38A3Q99624 504 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 FAM129AQ9BZQ8 928 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 PHACTR1Q9C0D0 580 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 SYNDIG1Q9H7V2 258 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 FBXO6Q9NRD1 293 aaPredicted RBP14.06□□□□□ -0.16
LIG1-208ENST00000595758 ZDHHC18Q9NUE0 388 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 PCDHB1Q9Y5F3 818 aa14.06□□□□□ -0.16
LIG1-208ENST00000595758 PIKFYVEQ9Y2I7 2098 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 MED19A0JLT2 244 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 B4GAT1O43505 415 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 HYAL3O43820 417 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 RPLP0P05388 317 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 F7P08709 466 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 CCR7P32248 378 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 PREPP48147 710 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 OR1D5P58170 312 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 CCL7P80098 99 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 MPP1Q00013 466 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 PLOD1Q02809 727 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 BOP1Q14137 746 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 NR1D2Q14995 579 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 BRD3Q15059 726 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 HES3Q5TGS1 186 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 CAPRIN2Q6IMN6 1127 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 TRMT10BQ6PF06 316 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 NAPRTQ6XQN6 538 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 SPRED1Q7Z699 444 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 TMPRSS12Q86WS5 348 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 ZNF761Q86XN6 746 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 KRT222Q8N1A0 295 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 GALNT15Q8N3T1 639 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 C2CD4AQ8NCU7 369 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 SPDYE1Q8NFV5 336 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 WDR48Q8TAF3 677 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 GSDMBQ8TAX9 411 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 LKAAEAR1Q8TD35 194 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 RMDN2Q96LZ7 410 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 C12orf66Q96MD2 445 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 PANX3Q96QZ0 392 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 INSM2Q96T92 566 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 OR52A5Q9H2C5 316 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 LRRN3Q9H3W5 708 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 POT1Q9NUX5 634 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 IMP3Q9NV31 184 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 KCNK4Q9NYG8 393 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 MTRF1LQ9UGC7 380 aaKnown RBP14.05□□□□□ -0.16
LIG1-208ENST00000595758 KNTC1P50748 2209 aa14.05□□□□□ -0.16
LIG1-208ENST00000595758 SLC5A10A0PJK1 596 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 IFRD1O00458 451 aaPredicted RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 KPNA5O15131 536 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 HAUS5O94927 633 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TOP3BO95985 862 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 MT-CO3P00414 261 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 APOA4P06727 396 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 RHOXF2BP0C7M4 288 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 MTHFD1P11586 935 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 PKMP14618 531 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 JUPP14923 745 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 AOAHP28039 575 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 PDHA2P29803 388 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 MAGEA4P43358 317 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 LEPRP48357 1165 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 CSE1LP55060 971 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 CLDN6P56747 220 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 MGAT5Q09328 741 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TMED2Q15363 201 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 AMZ1Q400G9 498 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CTSL3PQ5NE16 218 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TEDDM1Q5T9Z0 273 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CDCP2Q5VXM1 449 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CAPN12Q6ZSI9 719 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 KIAA0408Q6ZU52 694 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CEP128Q6ZU80 1094 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TMEM26Q6ZUK4 368 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TMPRSS7Q7RTY8 843 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CNTN4Q8IWV2 1026 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 RBM12BQ8IXT5 1001 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 IFT20Q8IY31 132 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 LRRN4CLQ8ND94 238 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 ASZ1Q8WWH4 475 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 TMEM159Q96B96 161 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 GFM1Q96RP9 751 aaKnown RBP14.04□□□□□ -0.16
LIG1-208ENST00000595758 RHOXF2Q9BQY4 288 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 CCDC68Q9H2F9 335 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 UCK1Q9HA47 277 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 SLC40A1Q9NP59 571 aa14.04□□□□□ -0.16
LIG1-208ENST00000595758 MOCS1Q9NZB8 636 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms