RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 EIF3IQ13347 325 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 THOC5Q13769 683 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 KRT33BQ14525 404 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 ZNF658BQ4V348 819 aaPredicted RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 NEPROQ6NW34 567 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 WDR74Q6RFH5 385 aaPredicted RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 OR4D9Q8NGE8 314 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 WDR36Q8NI36 951 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 GABPB2Q8TAK5 448 aaPredicted RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 CALML6Q8TD86 181 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 NCSTNQ92542 709 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 ELMO1Q92556 727 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 LRRC39Q96DD0 335 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 LIN37Q96GY3 246 aaPredicted RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 C12orf66Q96MD2 445 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 EBNA1BP2Q99848 306 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 TBC1D10AQ9BXI6 508 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 FOXP3Q9BZS1 431 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 ZMYND15Q9H091 742 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 POLR1BQ9H9Y6 1135 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 IMP3Q9NV31 184 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 DKK4Q9UBT3 224 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 VPS9D1Q9Y2B5 631 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 SNX24Q9Y343 169 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 UTP11Q9Y3A2 253 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 FAM169AQ9Y6X4 670 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 ZCWPW2A0A1B0GU75 182 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 GOLGA8KD6RF30 607 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 GOLGA8TH3BQL2 631 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 KPNA5O15131 536 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 RAD51CO43502 376 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 UBXN7O94888 489 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 AMD1P17707 334 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 PGAM1P18669 254 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 RPS3P23396 243 aaKnown RBP eCLIP14.69□□□□□ -0.065e-8■■■■■ 29
UPF1-202ENST00000594243 MAPK9P45984 424 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 LSSP48449 732 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 LIMK2P53671 638 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 ARL4CP56559 192 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 CYP4F3Q08477 520 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 CALCOCO2Q13137 446 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 TRA2AQ13595 282 aaKnown RBP eCLIP14.69□□□□□ -0.06
UPF1-202ENST00000594243 GPR18Q14330 331 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 LONRF1Q17RB8 773 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 WHAMMP3Q1A5X7 153 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 TYSND1Q2T9J0 566 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 BBS9Q3SYG4 887 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 PHF19Q5T6S3 580 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 PTRHD1Q6GMV3 140 aaKnown RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 XKR5Q6UX68 686 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 B3GNT8Q7Z7M8 397 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 SLITRK4Q8IW52 837 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 AGGF1Q8N302 714 aaeCLIP14.69□□□□□ -0.06
UPF1-202ENST00000594243 LILRA3Q8N6C8 439 aaPredicted RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 KDF1Q8NAX2 398 aaPredicted RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.69□□□□□ -0.06
UPF1-202ENST00000594243 SPDYE1Q8NFV5 336 aaPredicted RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 PANX3Q96QZ0 392 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 CMKLR1Q99788 373 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 NUDT22Q9BRQ3 303 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 RAB17Q9H0T7 212 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 P2RY12Q9H244 342 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 OR52A5Q9H2C5 316 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 SEMA6CQ9H3T2 930 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 C20orf96Q9NUD7 363 aaPredicted RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 AKAP7Q9P0M2 348 aaPredicted RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 WHRNQ9P202 907 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 GNPTGQ9UJJ9 305 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 SATB2Q9UPW6 733 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 PCDHGA8Q9Y5G5 932 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 CHD6Q8TD26 2715 aa14.69□□□□□ -0.06
UPF1-202ENST00000594243 ZFC3H1O60293 1989 aaKnown RBP14.69□□□□□ -0.06
UPF1-202ENST00000594243 BPTFQ12830 3046 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 IGHV5-10-1A0A0J9YXX1 117 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 UBA6A0AVT1 1052 aaPredicted RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 H3BMM5 538 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 MPOP05164 745 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 HOXB3P14651 431 aaPredicted RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 RPL21P46778 160 aaKnown RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 ADARP55265 1226 aaKnown RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 GABREP78334 506 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 CFHR1Q03591 330 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 HIF1AQ16665 826 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 ST3GAL2Q16842 350 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 SYTL3Q4VX76 610 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 C3orf38Q5JPI3 329 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 SPANXN3Q5MJ09 141 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 KLHL35Q6PF15 583 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 ZNF574Q6ZN55 896 aaPredicted RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 RAB11FIP2Q7L804 512 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 TMPRSS9Q7Z410 1059 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 PLXDC1Q8IUK5 500 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 CILP2Q8IUL8 1156 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 KIF18AQ8NI77 898 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 MDM1Q8TC05 714 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 ASZ1Q8WWH4 475 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 FERD3LQ96RJ6 166 aa14.68□□□□□ -0.06
UPF1-202ENST00000594243 TRIM56Q9BRZ2 755 aaKnown RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 INTS10Q9NVR2 710 aaKnown RBP14.68□□□□□ -0.06
UPF1-202ENST00000594243 CFAP20Q9Y6A4 193 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms