RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM129BQ96TA1 746 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 GDF15Q99988 308 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 SLC12A9Q9BXP2 914 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 ZCCHC2Q9C0B9 1178 aaKnown RBP13.94□□□□□ -0.18
LIG3-205ENST00000585941 EPHX3Q9H6B9 360 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 NOL11Q9H8H0 719 aaKnown RBP13.94□□□□□ -0.18
LIG3-205ENST00000585941 PARVBQ9HBI1 364 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 TMEM45AQ9NWC5 275 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 NOP53Q9NZM5 478 aaKnown RBP13.94□□□□□ -0.18
LIG3-205ENST00000585941 OPTCQ9UBM4 332 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 CDH22Q9UJ99 828 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 ADAMTS6Q9UKP5 1117 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 SARDHQ9UL12 918 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 ANGPTL3Q9Y5C1 460 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 COL4A3Q01955 1670 aa13.94□□□□□ -0.18
LIG3-205ENST00000585941 ATP6AP2A0A1C7CYW4 349 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 BBIP1A8MTZ0 92 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 K7EPI3 171 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 AREL1O15033 823 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 KATNA1O75449 491 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 ATP6AP2O75787 350 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 APODP05090 189 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 SNRPB2P08579 225 aaKnown RBP13.93□□□□□ -0.18
LIG3-205ENST00000585941 HIST1H2AGP0C0S8 130 aaPredicted RBP13.93□□□□□ -0.18
LIG3-205ENST00000585941 IDO1P14902 403 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 HIST1H2ADP20671 130 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 CYP2A7P20853 494 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 GGT5P36269 586 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 MRPL19P49406 292 aaKnown RBP13.93□□□□□ -0.18
LIG3-205ENST00000585941 HNMTP50135 292 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 AP1S2P56377 157 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 ACTR3P61158 418 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 CREB5Q02930 508 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 MESP2Q0VG99 397 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 ITPRIPL2Q3MIP1 535 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 AGKQ53H12 422 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 XKR7Q5GH72 579 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 FAM46CQ5VWP2 391 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 RNF165Q6ZSG1 346 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 PHYKPLQ8IUZ5 450 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 DSELQ8IZU8 1212 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 FBXW8Q8N3Y1 598 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 WDR60Q8WVS4 1066 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 ATP6V1E2Q96A05 226 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 RCN3Q96D15 328 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 HIST1H2AHQ96KK5 128 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 KCNA7Q96RP8 456 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 HIST1H2AJQ99878 128 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 H2AFJQ9BTM1 129 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 HDAC8Q9BY41 377 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 TUBB1Q9H4B7 451 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 MRPL40Q9NQ50 206 aaKnown RBP13.93□□□□□ -0.18
LIG3-205ENST00000585941 POLG2Q9UHN1 485 aa13.93□□□□□ -0.18
LIG3-205ENST00000585941 FADS2P1A8MWK0 482 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 TAPBPO15533 448 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 LINC01565O15544 149 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 OR4F21O95013 312 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 KAT7O95251 611 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 MATN4O95460 622 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 GUCA1CO95843 209 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 LINC00032P0C843 101 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 PRR35P0CG20 571 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 HLA-EP13747 358 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ADRB3P13945 408 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 HSPA7P48741 367 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 RPIAP49247 311 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 CCNG1P51959 295 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 MTTPP55157 894 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 HSPA14Q0VDF9 509 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ADAM15Q13444 863 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 GRIN2CQ14957 1233 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 PHKG1Q16816 387 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 POM121L1PQ3SYA9 428 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 TMEM52BQ4KMG9 183 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 KHDC1Q4VXA5 237 aaKnown RBP13.92□□□□□ -0.18
LIG3-205ENST00000585941 FBXO48Q5FWF7 155 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 UBE2R2Q712K3 238 aaPredicted RBP13.92□□□□□ -0.18
LIG3-205ENST00000585941 ERN2Q76MJ5 926 aaKnown RBP13.92□□□□□ -0.18
LIG3-205ENST00000585941 DET1Q7L5Y6 550 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 MIER2Q8N344 545 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 METTL6Q8TCB7 284 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 TSPEARQ8WU66 669 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ASB11Q8WXH4 323 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ELMO1Q92556 727 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 JADE3Q92613 823 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ARRDC3Q96B67 414 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 MYADMQ96S97 322 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 IPPKQ9H8X2 491 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 CD248Q9HCU0 757 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 ARL15Q9NXU5 204 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 BCAP29Q9UHQ4 241 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 TSR3Q9UJK0 312 aaKnown RBP13.92□□□□□ -0.18
LIG3-205ENST00000585941 ZNF225Q9UK10 706 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 LRRK1Q38SD2 2015 aa13.92□□□□□ -0.18
LIG3-205ENST00000585941 GFYI3L273 518 aa13.91□□□□□ -0.18
LIG3-205ENST00000585941 RFXAPO00287 272 aa13.91□□□□□ -0.18
LIG3-205ENST00000585941 OR7A17O14581 309 aa13.91□□□□□ -0.18
LIG3-205ENST00000585941 ATG13O75143 517 aa13.91□□□□□ -0.18
LIG3-205ENST00000585941 FKBP6O75344 327 aa13.91□□□□□ -0.18
LIG3-205ENST00000585941 STK16O75716 305 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms