RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ATP5OP48047 213 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 CASP6P55212 293 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RPL10AP62906 217 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 RGS1Q08116 209 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 EPS8Q12929 822 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 STARD3Q14849 445 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 KYAT1Q16773 422 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 TRNP1Q6NT89 227 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 C17orf107Q6ZR85 190 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 PIGZQ86VD9 579 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RFX6Q8HWS3 928 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 YIPF7Q8N8F6 280 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RNF149Q8NC42 400 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 UTP15Q8TED0 518 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 MZB1Q8WU39 189 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 FAM129BQ96TA1 746 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SPATA9Q9BWV2 254 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 BCO2Q9BYV7 579 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 POLE3Q9NRF9 147 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 GSN-AS1Q9NRJ2 163 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 COPZ2Q9P299 210 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SLC6A14Q9UN76 642 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 DTX4Q9Y2E6 619 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 AVILO75366 819 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 VAPBO95292 243 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 C22orf31O95567 290 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 AMHP03971 560 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 CD63P08962 238 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 TGM2P21980 687 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 TGFBR1P36897 503 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 DPP6P42658 865 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 HERVK_113P63132 956 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SLC25A11Q02978 314 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 ZNF169Q14929 603 aaPredicted RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 TAZQ16635 292 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 CDO1Q16878 200 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 TRIM60Q495X7 471 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SLC6A19Q695T7 634 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 LETMD1Q6P1Q0 360 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RNF180Q86T96 592 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 PDIK1LQ8N165 341 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 FEZF2Q8TBJ5 459 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 FAM110BQ8TC76 370 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 HEXDCQ8WVB3 486 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 PBXIP1Q96AQ6 731 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 BCL7BQ9BQE9 202 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 MMP28Q9H239 520 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ADAMTS10Q9H324 1103 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 MLXQ9UH92 298 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 MGAT4BQ9UQ53 548 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 KLF2Q9Y5W3 355 aaPredicted RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 CITO14578 2027 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 EI24O14681 340 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ACOT8O14734 319 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 OGTO15294 1046 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ALBP02768 609 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 OGNP20774 298 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 CAPGP40121 348 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SLC1A6P48664 564 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 GAD2Q05329 585 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 BMPR2Q13873 1038 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 MORF4L2Q15014 288 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RAB6CQ53S08 254 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 IER5Q5VY09 327 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 MFSD7Q6UXD7 560 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 R3HCC1LQ7Z5L2 792 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 MPP5Q8N3R9 675 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 NIPA2Q8N8Q9 360 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 C1orf127Q8N9H9 656 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 FBXO36Q8NEA4 188 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 OR10T2Q8NGX3 314 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ELP4Q96EB1 424 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ZNF778Q96MU6 729 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 SLC9A7Q96T83 725 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RAB6CQ9H0N0 254 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 PPIL3Q9H2H8 161 aaKnown RBP10.69□□□□□ -0.7
CLK3-226ENST00000569406 ACSS3Q9H6R3 686 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 DNPEPQ9ULA0 475 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 NME7Q9Y5B8 376 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 LINC00862A6NCI5 91 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 KCNN4O15554 427 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 LIASO43766 372 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 SNAPINO95295 136 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 URODP06132 367 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 IL7RP16871 459 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 GBX2P52951 348 aaPredicted RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 RHDQ02161 417 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 ADAM15Q13444 863 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 TUSC1Q2TAM9 212 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 DENND5AQ6IQ26 1287 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 LRRC8EQ6NSJ5 796 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 TAPT1Q6NXT6 567 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 DENND1BQ6P3S1 775 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 SMG8Q8ND04 991 aaKnown RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 MRPL47Q9HD33 250 aaKnown RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 CHMP1AQ9HD42 196 aaPredicted RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 ASH2LQ9UBL3 628 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 RALGAPA2Q2PPJ7 1873 aa10.68□□□□□ -0.7
CLK3-226ENST00000569406 RTCAO00442 366 aaKnown RBP10.68□□□□□ -0.7
CLK3-226ENST00000569406 DLGAP1O14490 977 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms