RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TRUB1Q8WWH5 349 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 SNX19Q92543 992 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MYDGFQ969H8 173 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 YIPF5Q969M3 257 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 TRIM43Q96BQ3 446 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 TLCD1Q96CP7 247 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CCDC51Q96ER9 411 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MVB12AQ96EY5 273 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 FBXL20Q96IG2 436 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 BTBD9Q96Q07 612 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MMS19Q96T76 1030 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 KRT12Q99456 494 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PKP4Q99569 1192 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 C12orf57Q99622 126 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CLSTN3Q9BQT9 956 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CCM2Q9BSQ5 444 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CNPY3Q9BT09 278 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ACPTQ9BZG2 426 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 BCL2L14Q9BZR8 327 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 STN1Q9H668 368 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 DHX33Q9H6R0 707 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 WDCPQ9H6R7 721 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SYNDIG1Q9H7V2 258 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ARMT1Q9H993 441 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 POLD4Q9HCU8 107 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 PRDM11Q9NQV5 511 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 GDF3Q9NR23 364 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS35-208ENST00000568612 SIDT1Q9NXL6 827 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 RRN3Q9NYV6 651 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HMG20BQ9P0W2 317 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NFKBIL1Q9UBC1 381 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 UXTQ9UBK9 157 aaPredicted RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 IPO11Q9UI26 975 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 SLC24A2Q9UI40 661 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CNOT7Q9UIV1 285 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 TLK1Q9UKI8 766 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SNX6Q9UNH7 406 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 HPSEQ9Y251 543 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 MRPS7Q9Y2R9 242 aaKnown RBP3.23□□□□□ -1.89
VPS35-208ENST00000568612 ARL2BPQ9Y2Y0 163 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 NEU2Q9Y3R4 380 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SNX13Q9Y5W8 968 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SAR1BQ9Y6B6 198 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 CEPT1Q9Y6K0 416 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 SESN1Q9Y6P5 492 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 AGLP35573 1532 aa3.23□□□□□ -1.89
VPS35-208ENST00000568612 ATP10BO94823 1461 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PZPP20742 1482 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SALL3Q9BXA9 1300 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SALL1Q9NSC2 1324 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TAF1P21675 1872 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZFYVE9O95405 1425 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 A0A1W2PPW3 197 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 A0A1W2PS29 197 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 E2F8A0AVK6 867 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 C12orf71A8MTZ7 269 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 E9PLN8 166 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 F5H697 171 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 H0YCG3 227 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 H0YGN5 161 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 M0QYG6 137 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 WRBO00258 174 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PGRMC1O00264 195 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 PODXLO00592 558 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 YY2O15391 372 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CLDN3O15551 220 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ITM2AO43736 263 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CCNT2O60583 730 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 CDC123O75794 336 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 IDH1O75874 414 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 KRT36O76013 467 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 GOSR1O95249 250 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TNFAIP8O95379 198 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 AHSGP02765 367 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CHRM2P08172 466 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SERPINF2P08697 491 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ACAA1P09110 424 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 CD48P09326 243 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 FTH1P19P0C7X4 201 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 THEGLP0DJG4 465 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 COX5BP10606 129 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CYP2A6P11509 494 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 SRCP12931 536 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RARGP13631 454 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CCDC130P13994 396 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 UQCRBP14927 111 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 GNSP15586 552 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RAB3AP20336 220 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RAB4AP20338 218 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 KELP23276 732 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 GATA3P23771 443 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 AKAP5P24588 427 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MARCKSP29966 332 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 PRDX5P30044 214 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ADRA1BP35368 520 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MPLP40238 635 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 EIF2S3P41091 472 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 PRKCIP41743 596 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 BTDP43251 543 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms