RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DET1Q7L5Y6 550 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 TMEM135Q86UB9 458 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 APLFQ8IW19 511 aaPredicted RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 GPR87Q9BY21 358 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 TWSG1Q9GZX9 223 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ASB8Q9H765 288 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 KIR3DX1Q9H7L2 352 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 AKIRIN1Q9H9L7 192 aaPredicted RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 FGF21Q9NSA1 209 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 FKBPLQ9UIM3 349 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 TP53TG5Q9Y2B4 290 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 CFAP20Q9Y6A4 193 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 UBA6A0AVT1 1052 aaPredicted RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 CDC14CA4D256 554 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 CLEC18AA5D8T8 446 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 K7EM74 188 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 RFPL1O75677 317 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 CTNNA1P35221 906 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 TUBB4BP68371 445 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 OTUD4Q01804 1114 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 SRSF1Q07955 248 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-216ENST00000565316 KLRB1Q12918 225 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 LAMB3Q13751 1172 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 TUBB2AQ13885 445 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ANKRD20A2Q5SQ80 823 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ANKRD20A1Q5TYW2 823 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ANKRD20A3Q5VUR7 823 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 CAPRIN2Q6IMN6 1127 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 CLEC18BQ6UXF7 455 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 DAAM2Q86T65 1068 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 OOSP2Q86WS3 158 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 CLEC18CQ8NCF0 446 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 SPDYE1Q8NFV5 336 aaPredicted RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 OR8K5Q8NH50 307 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ACTL9Q8TC94 416 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 RMDN2Q96LZ7 410 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 C12orf66Q96MD2 445 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 TUBB2BQ9BVA1 445 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ACTL8Q9H568 366 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 AAR2Q9Y312 384 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 PCDHA3Q9Y5H8 950 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 PRRC2CQ9Y520 2896 aaKnown RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 PJA2O43164 708 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 ZBTB11O95625 1053 aaPredicted RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 NTRK1P04629 796 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 PSMB4P28070 264 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 PTPN4P29074 926 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 ARL4DP49703 201 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 KPNA2P52292 529 aaKnown RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 ZNF140P52738 457 aaPredicted RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 PDE1BQ01064 536 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 OLIG2Q13516 323 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 SPA17Q15506 151 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 DENND5AQ6IQ26 1287 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 DUS1LQ6P1R4 473 aaKnown RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 ZNF517Q6ZMY9 492 aaPredicted RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 CDKL3Q8IVW4 592 aaPredicted RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 KLHDC8BQ8IXV7 354 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 NAT14Q8WUY8 206 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 SEC14L1Q92503 715 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 ZNF501Q96CX3 271 aaPredicted RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 CALR3Q96L12 384 aaKnown RBP16.69■□□□□ 0.26
CLN3-216ENST00000565316 APOL2Q9BQE5 337 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 FERMT1Q9BQL6 677 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 CCM2Q9BSQ5 444 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 ARNT2Q9HBZ2 717 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 LATS2Q9NRM7 1088 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 TLK1Q9UKI8 766 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 BTRCQ9Y297 605 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 DOPEY2Q9Y3R5 2298 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 COLEC10Q9Y6Z7 277 aa16.69■□□□□ 0.26
CLN3-216ENST00000565316 OR6C74A6NCV1 312 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 CRTAMO95727 393 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 SLC35G4P0C7Q5 338 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 NR1D1P20393 614 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 NDUFS1P28331 727 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 PRLHRP49683 370 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 SEMA5AQ13591 1074 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 UBAP2LQ14157 1087 aaKnown RBP16.68■□□□□ 0.26
CLN3-216ENST00000565316 UGT8Q16880 541 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 ZNF658BQ4V348 819 aaPredicted RBP16.68■□□□□ 0.26
CLN3-216ENST00000565316 CCDC181Q5TID7 509 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 CFAP206Q8IYR0 622 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 NXPE1Q8N323 547 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 LILRA3Q8N6C8 439 aaPredicted RBP16.68■□□□□ 0.26
CLN3-216ENST00000565316 OR13C4Q8NGS5 318 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 HM13Q8TCT9 377 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 HEXDCQ8WVB3 486 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 MIB2Q96AX9 1013 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 ULK4Q96C45 1275 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 DCUN1D1Q96GG9 259 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 SPATA13Q96N96 652 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 PPP1R2P1Q96PQ5 205 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 RUFY1Q96T51 708 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 OSBPL8Q9BZF1 889 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 LUC7LQ9NQ29 371 aaKnown RBP16.68■□□□□ 0.26
CLN3-216ENST00000565316 KCND1Q9NSA2 647 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 MAN2B2Q9Y2E5 1009 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 HEBP2Q9Y5Z4 205 aa16.68■□□□□ 0.26
CLN3-216ENST00000565316 IGLV3-16A0A075B6K0 115 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms