RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 LGALS13Q9UHV8 139 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 FKBPLQ9UIM3 349 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 TLK1Q9UKI8 766 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 PNMA8BQ9ULN7 279 aaPredicted RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 PCDHGA8Q9Y5G5 932 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 COMMD10Q9Y6G5 202 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 CSNK1G3Q9Y6M4 447 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 AHCTF1Q8WYP5 2266 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 EME2A4GXA9 379 aaPredicted RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 H3BMM5 538 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 FPGTO14772 594 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 AREL1O15033 823 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 TNFSF15O95150 251 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CELA2BP08218 269 aaPredicted RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 BPIP17213 487 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 PSMA3P25788 255 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 PFN3P60673 137 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CTBP1Q13363 440 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 PRRT3Q5FWE3 981 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 MROH9Q5TGP6 573 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 LIPIQ6XZB0 460 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 ZNF765Q7L2R6 523 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CCDC91Q7Z6B0 441 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 GALNT7Q86SF2 657 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 TSPAN33Q86UF1 283 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CILP2Q8IUL8 1156 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 UNC5BQ8IZJ1 945 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 C2CD4AQ8NCU7 369 aaPredicted RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 ALKBH8Q96BT7 664 aaKnown RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 AP2M1Q96CW1 435 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CABS1Q96KC9 395 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 AGAP2Q99490 1192 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 LRRC61Q9BV99 259 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 BOCQ9BWV1 1114 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 TSSK1BQ9BXA7 367 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 C1QTNF2Q9BXJ5 285 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 CLPBQ9H078 707 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 RHOJQ9H4E5 214 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 IL26Q9NPH9 171 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 WDR70Q9NW82 654 aa11.62□□□□□ -0.55
LDLR-212ENST00000560467 APOBEC3BQ9UH17 382 aaKnown RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 NOVA2Q9UNW9 492 aaKnown RBP11.62□□□□□ -0.55
LDLR-212ENST00000560467 UBA6A0AVT1 1052 aaPredicted RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 CXorf49A8MYA2 514 aaPredicted RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 CCL22O00626 93 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TPP1O14773 563 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 MMP20O60882 483 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 ITGA2BP08514 1039 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 LHCGRP22888 699 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TYK2P29597 1187 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 AKT1P31749 480 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 IGFALSP35858 605 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 SLC1A2P43004 574 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 LEPRP48357 1165 aaKnown RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 CCT5P48643 541 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 SERPINB8P50452 374 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 ARSDP51689 593 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 DCDC1P59894 354 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 NFATC2Q13469 925 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 USP10Q14694 798 aaKnown RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 PTPRCAPQ14761 206 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TCEA2Q15560 299 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 UGT3A1Q6NUS8 523 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 CCDC81Q6ZN84 652 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 Q6ZVL8 140 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 RAPH1Q70E73 1250 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 PRICKLE2Q7Z3G6 844 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 HSD11B1LQ7Z5J1 315 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 B3GNT8Q7Z7M8 397 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 CLEC14AQ86T13 490 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 NLRP8Q86W28 1048 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 PHACTR4Q8IZ21 702 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TRAM1L1Q8N609 369 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 GPATCH11Q8N954 259 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 WDR36Q8NI36 951 aaKnown RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 DCAKDQ8WVC6 231 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 GRAMD1AQ96CP6 724 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 NUS1Q96E22 293 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 LENG8Q96PV6 779 aaPredicted RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 SMIM14Q96QK8 99 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 COPS8Q99627 209 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 RBBP8Q99708 897 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 SH3GL2Q99962 352 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 CCDC3Q9BQI4 270 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 DHRS4Q9BTZ2 278 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TRIM4Q9C037 500 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 ZCCHC2Q9C0B9 1178 aaKnown RBP11.61□□□□□ -0.55
LDLR-212ENST00000560467 IL1RAPL1Q9NZN1 696 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 SPASTQ9UBP0 616 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 ACTL7BQ9Y614 415 aa11.61□□□□□ -0.55
LDLR-212ENST00000560467 TLN1Q9Y490 2541 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 PTPN13Q12923 2485 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 CCDC187A0A096LP49 1063 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 TRIM49D1C9J1S8 452 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 LMO7DNF2Z398 122 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 AGPSO00116 658 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 QSOX1O00391 747 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 EFSO43281 561 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 RECQL5O94762 991 aaPredicted RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 AHSGP02765 367 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms