RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CTSL3PQ5NE16 218 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 HECTD2Q5U5R9 776 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 AGAP9Q5VTM2 703 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 TTC23LQ6PF05 361 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SLC30A9Q6PML9 568 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ADGRD1Q6QNK2 874 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ABRAXAS1Q6UWZ7 409 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 NEK10Q6ZWH5 1172 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 C11orf96Q7Z7L8 435 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 NKAPQ8N5F7 415 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 ZBTB2Q8N680 514 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 OR6C4Q8NGE1 309 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 UHMK1Q8TAS1 419 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 SAP25Q8TEE9 199 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SH3KBP1Q96B97 665 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 MRRFQ96E11 262 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 PAFAH2Q99487 392 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 GPR22Q99680 433 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 LRRC61Q9BV99 259 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 TCEAL2Q9H3H9 227 aaPredicted RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 COG4Q9H9E3 785 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 POPDC3Q9HBV1 291 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SARS2Q9NP81 518 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 NLGN3Q9NZ94 848 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 TAAR2Q9P1P5 351 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 PSMC3IPQ9P2W1 217 aaPredicted RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 KLF15Q9UIH9 416 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 PCOLCE2Q9UKZ9 415 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 KCNK6Q9Y257 313 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 DNAJC16Q9Y2G8 782 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 PRKAB1Q9Y478 270 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 COLEC10Q9Y6Z7 277 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 KNTC1P50748 2209 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ASXL3Q9C0F0 2248 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SLC5A10A0PJK1 596 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 PABPN1LA6NDY0 278 aaKnown RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 RASGRF2O14827 1237 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SNX2O60749 519 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SDC3O75056 442 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 CDH16O75309 829 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 NIPSNAP2O75323 286 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SLCO2B1O94956 709 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 C1QAP02745 245 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 MPC1LP0DKB6 136 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 F3P13726 295 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 STMN1P16949 149 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SAT1P21673 171 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 AK4P27144 223 aaPredicted RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 NDUFS1P28331 727 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 CCR7P32248 378 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 GRK6P43250 576 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 LIMK1P53667 647 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 IL2P60568 153 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 HSPA14Q0VDF9 509 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 BOP1Q14137 746 aaKnown RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 NFE2L1Q14494 772 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 KRT33BQ14525 404 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SHBQ15464 509 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 RSPO4Q2I0M5 234 aaPredicted RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 UAP1L1Q3KQV9 507 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TAF1BQ53T94 588 aaPredicted RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 TCEAL6Q6IPX3 200 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 ZCCHC8Q6NZY4 707 aaKnown RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 ZNF549Q6P9A3 640 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 OGFOD3Q6PK18 319 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SLC9B2Q86UD5 537 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TDRPQ86YL5 185 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TRIM48Q8IWZ4 208 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 RBM12BQ8IXT5 1001 aaKnown RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 KRT222Q8N1A0 295 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 DCLK2Q8N568 766 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 OR4C6Q8NH72 309 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 MAPK15Q8TD08 544 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 MAGEC3Q8TD91 643 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SETD7Q8WTS6 366 aaKnown RBP9.05□□□□□ -0.96
LDLR-210ENST00000559340 ZDHHC1Q8WTX9 485 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 ZFPM2Q8WW38 1151 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TCEAL3Q969E4 200 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 CABS1Q96KC9 395 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TSNARE1Q96NA8 513 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 RUFY1Q96T51 708 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 GPR21Q99679 349 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 CDC6Q99741 560 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 PARD6AQ9NPB6 346 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 FSCN3Q9NQT6 498 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SLC23A2Q9UGH3 650 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 TLK1Q9UKI8 766 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 SLC39A10Q9ULF5 831 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 PSAT1Q9Y617 370 aa9.05□□□□□ -0.96
LDLR-210ENST00000559340 COL5A1P20908 1838 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 UQCRHLA0A096LP55 91 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 C4orf47A7E2U8 309 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 IQCF5A8MTL0 148 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 CDX4O14627 284 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 FFAR2O15552 330 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 GPC4O75487 556 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 VIPP01282 170 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 MPOP05164 745 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 UQCRHP07919 91 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 XRCC1P18887 633 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms