RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SNRNP27Q8WVK2 155 aaKnown RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 KCNJ9Q92806 393 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 AURKBQ96GD4 344 aaPredicted RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 SPATA17Q96L03 361 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 CGREF1Q99674 301 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 NUSAP1Q9BXS6 441 aaKnown RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 TDRKHQ9Y2W6 561 aaKnown RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 PCDHGA11Q9Y5H2 935 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 CHD5Q8TDI0 1954 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 H3BMQ9 156 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 PFDN1O60925 122 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ENO2P09104 434 aaPredicted RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 PRKACGP22612 351 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 EEF1B2P24534 225 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 SH3BGRP55822 239 aaPredicted RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 EEFSECP57772 596 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 ESRRGP62508 458 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 C16orf72Q14CZ0 275 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 C5orf22Q49AR2 442 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 IRAK1BP1Q5VVH5 260 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 DUS1LQ6P1R4 473 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 ABRAXAS1Q6UWZ7 409 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 MILR1Q7Z6M3 343 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 PATL1Q86TB9 770 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 RIMKLAQ8IXN7 391 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 FBXO22Q8NEZ5 403 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 COG8Q96MW5 612 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ZNF583Q96ND8 569 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 GPR63Q9BZJ6 419 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 EXD2Q9NVH0 621 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 RIC8BQ9NVN3 520 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 IL17CQ9P0M4 197 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ST14Q9Y5Y6 855 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 KANSL1LA0AUZ9 987 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 TRIM64CA6NLI5 447 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 FFAR2O15552 330 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 SMAD6O43541 496 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 CLDN11O75508 207 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 IL7RP16871 459 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 NR4A1P22736 598 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 TRAF3Q13114 568 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 MYBPC3Q14896 1274 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 FAM174BQ3ZCQ3 159 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 AARS2Q5JTZ9 985 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 TXNDC11Q6PKC3 985 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 PAPD5Q8NDF8 572 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 BPIFB1Q8TDL5 484 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.68□□□□□ -0.383e-6■□□□□ 10.6
LDLR-207ENST00000558013 P2RY12Q9H244 342 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ZIM2Q9NZV7 527 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 IFT80Q9P2H3 777 aaPredicted RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 GALTP07902 379 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 MATN1P21941 496 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 HTR1EP28566 365 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ADARB1P78563 741 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 ZXDBP98169 803 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 SERPINA9Q86WD7 417 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 ITCHQ96J02 903 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 THUMPD3Q9BV44 507 aaKnown RBP12.68□□□□□ -0.38
LDLR-207ENST00000558013 ADGRE3Q9BY15 652 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 TMEM161AQ9NX61 479 aa12.68□□□□□ -0.38
LDLR-207ENST00000558013 GBF1Q92538 1859 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ILVBLA1L0T0 632 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 TRIM64A6NGJ6 449 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 GAPDHSO14556 408 aaPredicted RBP12.67□□□□□ -0.38
LDLR-207ENST00000558013 PRAMEF1O95521 474 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ARSFP54793 590 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 SPANXN4Q5MJ08 99 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 PTRHD1Q6GMV3 140 aaKnown RBP12.67□□□□□ -0.38
LDLR-207ENST00000558013 CLEC4FQ8N1N0 589 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ITFG1Q8TB96 612 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 SLC25A37Q9NYZ2 338 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 LHX3Q9UBR4 397 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 CCL27Q9Y4X3 112 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ARIH1Q9Y4X5 557 aaPredicted RBP12.67□□□□□ -0.38
LDLR-207ENST00000558013 PCDHB7Q9Y5E2 793 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ARVCFO00192 962 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 GSNP06396 782 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 HMGA1P17096 107 aaKnown RBP12.67□□□□□ -0.38
LDLR-207ENST00000558013 PIGAP37287 484 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 MTHFRP42898 656 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 PTGER3P43115 390 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 BNIP3Q12983 259 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 HECTD3Q5T447 861 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 NCEH1Q6PIU2 408 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 USP51Q70EK9 711 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ADGRG2Q8IZP9 1017 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 PAF1Q8N7H5 531 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 PCSK9Q8NBP7 692 aaKnown RBP12.67□□□□□ -0.38
LDLR-207ENST00000558013 TNIP2Q8NFZ5 429 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 TSPEARQ8WU66 669 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 GLT1D1Q96MS3 346 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 EGFL8Q99944 293 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 TTPALQ9BTX7 342 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 IRAK4Q9NWZ3 460 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 HACD3Q9P035 362 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 KLQ9UEF7 1012 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 DHRS7Q9Y394 339 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 ZNF711Q9Y462 761 aa12.67□□□□□ -0.38
LDLR-207ENST00000558013 SLC30A1Q9Y6M5 507 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms