RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CA12O43570 354 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ABCB7O75027 752 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 DEAF1O75398 565 aaPredicted RBP12.16□□□□□ -0.46
LDLR-205ENST00000557933 NDUFS3O75489 264 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 SEC14L2O76054 403 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ABCB1P08183 1280 aaPredicted RBP12.16□□□□□ -0.46
LDLR-205ENST00000557933 ZNF12P17014 697 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 NR4A2P43354 598 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 RENBPP51606 427 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ZNF235Q14590 738 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 OVOS1Q6IE37 1185 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 FBXL22Q6P050 247 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 LINGO4Q6UY18 593 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 AGMOQ6ZNB7 445 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 LIMS2Q7Z4I7 341 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 CDC26Q8NHZ8 85 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ARRDC2Q8TBH0 407 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 OSCP1Q8WVF1 389 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.16□□□□□ -0.462e-6■■■■□ 26.2
LDLR-205ENST00000557933 PGAP3Q96FM1 320 aaPredicted RBP12.16□□□□□ -0.46
LDLR-205ENST00000557933 TRMOQ9BU70 441 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 TRIM54Q9BYV2 358 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 MFSD1Q9H3U5 465 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 CD320Q9NPF0 282 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.16□□□□□ -0.46
LDLR-205ENST00000557933 AP3B1O00203 1094 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 SLC7A4O43246 635 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ZNF682O95780 498 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 BMP4P12644 408 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 NOGQ13253 232 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 AP5B1Q2VPB7 878 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 SPANXN4Q5MJ08 99 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 GTF2IRD2BQ6EKJ0 949 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 DLEU7Q6UYE1 221 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 GTF2IRD2Q86UP8 949 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 SLC22A16Q86VW1 577 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 LSRQ86X29 649 aaPredicted RBP12.16□□□□□ -0.46
LDLR-205ENST00000557933 CLDN19Q8N6F1 224 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 PDPRQ8NCN5 879 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 OR2T12Q8NG77 320 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ADAMTS16Q8TE57 1224 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 CDKN2AIPNLQ96HQ2 116 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 LRRC3Q9BY71 257 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 RNF167Q9H6Y7 350 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 ATP13A3Q9H7F0 1226 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 VNN3Q9NY84 501 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 GMIPQ9P107 970 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 FKBPLQ9UIM3 349 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 NOD1Q9Y239 953 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 SNX5Q9Y5X3 404 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 TANC1Q9C0D5 1861 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 LINC00854A0A1B0GVQ3 168 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 MYADML2A6NDP7 307 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 hCG_2039718K7EN88 272 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 B4GALT3O60512 393 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 HSPA7P48741 367 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 AIF1P55008 147 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 EMX1Q04741 257 aaPredicted RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 PRKG2Q13237 762 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 TRIP4Q15650 581 aaPredicted RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 MS4A13Q5J8X5 152 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 ARTNQ5T4W7 220 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 MRNIPQ6NTE8 343 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 TAF2Q6P1X5 1199 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CYP20A1Q6UW02 462 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 PAGE2Q7Z2X7 111 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 SPATA2LQ8IUW3 424 aaPredicted RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 PAF1Q8N7H5 531 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 LPCAT1Q8NF37 534 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 OR7A2PQ8NGA2 310 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 STAG3L4Q8TBR4 150 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CGREF1Q99674 301 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 ACTR8Q9H981 624 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 FLRT1Q9NZU1 646 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 DNMT3BQ9UBC3 853 aaKnown RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 FAM8A1Q9UBU6 413 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 MROH6A6NGR9 719 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CLDN25C9JDP6 229 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 M0R129 80 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CPNE6O95741 557 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 NEK2P51955 445 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 MLLT6P55198 1093 aaPredicted RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 EPS8Q12929 822 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 SF3B4Q15427 424 aaKnown RBP eCLIP12.15□□□□□ -0.462e-7■■■□□ 18.3
LDLR-205ENST00000557933 TAF1CQ15572 869 aaPredicted RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 FAM98BQ52LJ0 330 aaKnown RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 PRMT9Q6P2P2 845 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 GPRIN3Q6ZVF9 776 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 ZCCHC7Q8N3Z6 543 aaKnown RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 RNF175Q8N4F7 328 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 MCOLN3Q8TDD5 553 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 BPIFB1Q8TDL5 484 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 RAB2BQ8WUD1 216 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 FKBP10Q96AY3 582 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 NRBF2Q96F24 287 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 ZNF583Q96ND8 569 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 NODALQ96S42 347 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CORO1BQ9BR76 489 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 AARSD1Q9BTE6 412 aaKnown RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 NSUN3Q9H649 340 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms