RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CPQQ9Y646 472 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 DOCK4Q8N1I0 1966 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 M0QX08 132 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 B4GAT1O43505 415 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 MRPS14O60783 128 aaKnown RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CNTN5O94779 1100 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CST1P01037 141 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PRDX3P30048 256 aaKnown RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 TTPAP49638 278 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PGFP49763 221 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 RAD23AP54725 363 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PCBP2Q15366 365 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PLA2G4EQ3MJ16 856 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 FBXL22Q6P050 247 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 RALGPS2Q86X27 583 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 EID3Q8N140 333 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 FBLIM1Q8WUP2 373 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 ABHD8Q96I13 439 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 FUBP3Q96I24 572 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF583Q96ND8 569 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 NODALQ96S42 347 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 NECTIN3Q9NQS3 549 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 TRNAU1APQ9NX07 287 aaKnown RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CD274Q9NZQ7 290 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 IKZF3Q9UKT9 509 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PCDHB8Q9UN66 801 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 ORC6Q9Y5N6 252 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 V9GYQ6 96 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 FAM92AA1XBS5 289 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 GOLGA8CPA6NN73 597 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 C2orf81A6NN90 581 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF99A8MXY4 864 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-232ENST00000557487 ANKRD28O15084 1053 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 SLC16A6O15403 523 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 OR4F21O95013 312 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 NTRK1P04629 796 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 RETP07949 1114 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 TCF3P15923 654 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 AKT1P31749 480 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 SLC16A12Q6ZSM3 486 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 HIPK1Q86Z02 1210 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 SETD9Q8NE22 299 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 KCNJ9Q92806 393 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 SLC47A1Q96FL8 570 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 RPL10LQ96L21 214 aaKnown RBP16.05■□□□□ 0.16
SHMT2-232ENST00000557487 PPM1MQ96MI6 270 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 C17orf80Q9BSJ5 609 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 AKIP1Q9NQ31 210 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 INIPQ9NRY2 104 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 GALPQ9UBC7 116 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 DOLKQ9UPQ8 538 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 USP22Q9UPT9 525 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 HSPE1-MOB4S4R3N1 261 aa16.05■□□□□ 0.16
SHMT2-232ENST00000557487 GNGT2O14610 69 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 NDUFS2O75306 463 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 GABARAPO95166 117 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 TSPAN12O95859 305 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF865P0CJ78 1059 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ITGAMP11215 1152 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PCSK2P16519 638 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 GRK3P35626 688 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 OPRL1P41146 370 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 HALP42357 657 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 AGTR2P50052 363 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 OXCT1P55809 520 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 MTPNP58546 118 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PRKCZQ05513 592 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 GALNT3Q14435 633 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PTPRNQ16849 979 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF691Q5VV52 312 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 CDYL2Q8N8U2 506 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF548Q8NEK5 533 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 METTL6Q8TCB7 284 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 TAMM41Q96BW9 452 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PDLIM5Q96HC4 596 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ALPK1Q96QP1 1244 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ACOX2Q99424 681 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 MGME1Q9BQP7 344 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ACTR8Q9H981 624 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PDFQ9HBH1 243 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ANKHQ9HCJ1 492 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 DAPK2Q9UIK4 370 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 NUDT5Q9UKK9 219 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 LOC100130705A0A1B0GUX0 176 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 SLC1A7O00341 560 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 LSM1O15116 133 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ADAM23O75077 832 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 CNOT3O75175 753 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 EIF2S1P05198 315 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 G6PDP11413 515 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 IL7RP16871 459 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 FLT3LGP49771 235 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ERVPABLB-1P60509 514 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ISL1P61371 349 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 CD47Q08722 323 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 KCNAB2Q13303 367 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PTPRCAPQ14761 206 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 SPCS2Q15005 226 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 NFE2Q16621 373 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 SCN4BQ8IWT1 228 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms