RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CEACAM1P13688 526 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF26P17031 533 aaPredicted RBP3.44□□□□□ -1.86
SCFD1-216ENST00000555550 ITGA3P26006 1051 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 MAN1A1P33908 653 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 TSPAN7P41732 249 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 THOP1P52888 689 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GAGE2BQ13066 116 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 MAMLD1Q13495 774 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CRYMQ14894 314 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 ASTE1Q2TB18 679 aaPredicted RBP3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GAGE2EQ4V326 116 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CCDC70Q6NSX1 233 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GAGE2AQ6NT46 116 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GALNT5Q7Z7M9 940 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 PLD3Q8IV08 490 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CRYBG2Q8N1P7 616 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 L3MBTL4Q8NA19 623 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 NSL1Q96IY1 281 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 OR2A14Q96R47 310 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 C1QTNF1Q9BXJ1 281 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 FTOQ9C0B1 505 aaKnown RBP eCLIP3.44□□□□□ -1.86
SCFD1-216ENST00000555550 WDR13Q9H1Z4 485 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 FGF22Q9HCT0 170 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GAGE2DQ9UEU5 116 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 SLC7A7Q9UM01 511 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CMAHPQ9Y471 501 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 TDRD9Q8NDG6 1382 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 A0A1W2PNU3 283 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SLC22A2O15244 555 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 ARHGEF9O43307 516 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 CREB3O43889 395 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 TRMUO75648 421 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 TPPPO94811 219 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 MBD4O95243 580 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 CLPTM1O96005 669 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 NMBRP28336 390 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 CLK1P49759 484 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SNRPEP62304 92 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 MPP1Q00013 466 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SETQ01105 290 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 PRKAA1Q13131 559 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 RRS1Q15050 365 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 RARS2Q5T160 578 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 JADE1Q6IE81 842 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 CFAP77Q6ZQR2 320 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SCYL3Q8IZE3 742 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SCFD2Q8WU76 684 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF653Q96CK0 615 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SLC47A1Q96FL8 570 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF582Q96NG8 517 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 TRAF4Q9BUZ4 470 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 PELI2Q9HAT8 420 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 MBNL1Q9NR56 388 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 C2orf42Q9NWW7 574 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 CACNG5Q9UF02 275 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 NENFQ9UMX5 172 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 PCDHGA5Q9Y5G8 931 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.43□□□□□ -1.86
SCFD1-216ENST00000555550 KIAA1210Q9ULL0 1709 aa3.43□□□□□ -1.86
SCFD1-216ENST00000555550 MED19A0JLT2 244 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 FRMD3A2A2Y4 597 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 KRTAP16-1A8MUX0 517 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 A8MZ25 164 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 NDUFS4O43181 175 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 EML2O95834 649 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 NGFP01138 241 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 CD4P01730 458 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 RB1P06400 928 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 LAMP2P13473 410 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 SELLP14151 372 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 CEACAM8P31997 349 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 LUMP51884 338 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 CDH8P55286 799 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 SNRPD1P62314 119 aaKnown RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 TUBB2AQ13885 445 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 KRT33BQ14525 404 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 GCNT6Q5T4J0 391 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 KIAA0930Q6ICG6 404 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 CLEC17AQ6ZS10 378 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 CHST9Q7L1S5 443 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 TBC1D16Q8TBP0 767 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 DAZLQ92904 295 aaKnown RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 LINC00479Q96M42 142 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 OPRPNQ99935 248 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 TUBB2BQ9BVA1 445 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 PAG1Q9NWQ8 432 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 FBXL17Q9UF56 701 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 RASAL2Q9UJF2 1139 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 LYVE1Q9Y5Y7 322 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 SPIN1Q9Y657 262 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-216ENST00000555550 PRSS21Q9Y6M0 314 aa3.42□□□□□ -1.86
SCFD1-216ENST00000555550 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 DNM1LO00429 736 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 EPB41L2O43491 1005 aaKnown RBP3.41□□□□□ -1.86
SCFD1-216ENST00000555550 SCGB1D1O95968 90 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 ACP2P11117 423 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 PON1P27169 355 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 SNX30Q5VWJ9 437 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 FAAH2Q6GMR7 532 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 CORO6Q6QEF8 472 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms