RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ACMSDQ8TDX5 336 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 RELTQ969Z4 430 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 MRRFQ96E11 262 aaKnown RBP4.97□□□□□ -1.61
VTI1B-202ENST00000553619 TSPAN17Q96FV3 270 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 DNAJC1Q96KC8 554 aaKnown RBP4.97□□□□□ -1.61
VTI1B-202ENST00000553619 NSMCE3Q96MG7 304 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ASB2Q96Q27 587 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 SMC6Q96SB8 1091 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ACOX2Q99424 681 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 SH3GL2Q99962 352 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ZSCAN5AQ9BUG6 496 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 TSSK1BQ9BXA7 367 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 C1QTNF7Q9BXJ2 289 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 FAM83DQ9H4H8 585 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ASB8Q9H765 288 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 CNOT10Q9H9A5 744 aaKnown RBP4.97□□□□□ -1.61
VTI1B-202ENST00000553619 SGK2Q9HBY8 427 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 SYTL2Q9HCH5 934 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 LTB4R2Q9NPC1 389 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 PCDH12Q9NPG4 1184 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ARHGEF3Q9NR81 526 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 ZNF446Q9NWS9 450 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 FBXL12Q9NXK8 326 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 B4GALT6Q9UBX8 382 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 TBK1Q9UHD2 729 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 DCDC2Q9UHG0 476 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 LGALS13Q9UHV8 139 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 CRLS1Q9UJA2 301 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 TLK1Q9UKI8 766 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 FBXO5Q9UKT4 447 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 GRID1Q9ULK0 1009 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 CA14Q9ULX7 337 aa4.97□□□□□ -1.61
VTI1B-202ENST00000553619 CKAP5Q14008 2032 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TRPM6Q9BX84 2022 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3DA0A087WVF3 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3IA0A087WXS9 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3EA0A087X179 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3KA0A087X1G2 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CCDC78A2IDD5 438 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CCDC162PA2VCL2 907 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3FA6NER0 549 aaPredicted RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 LRRC72A6NJI9 287 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 A8MX80 341 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3LB9A6J9 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TRIM49D1C9J1S8 452 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TOR1BO14657 336 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 KPNA5O15131 536 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 MID1O15344 667 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 BUD23O43709 281 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 RNASEH2AO75792 299 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 FAM155BO75949 473 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 SRP72O76094 671 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 AHSGP02765 367 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 GSTA1P08263 222 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ITGA2BP08514 1039 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3HP0C7X1 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 COL6A2P12110 1019 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 STMN1P16949 149 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CD9P21926 228 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CRABP2P29373 138 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 NUDT1P36639 197 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 SKIV2L2P42285 1042 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 PTGER3P43115 390 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 SLCO1A2P46721 670 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 RPS9P46781 194 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CD151P48509 253 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 SPINT3P49223 89 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CLCN5P51795 746 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 KPNA2P52292 529 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ZNF140P52738 457 aaPredicted RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 STC1P52823 247 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 COPAP53621 1224 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 LIMK2P53671 638 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ADARP55265 1226 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 DCDC1P59894 354 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 RPS14P62263 151 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 RPS21P63220 83 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ZXDAP98168 799 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 XIAPP98170 497 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 DPTQ07507 201 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CTBP1Q13363 440 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 COL9A2Q14055 689 aaPredicted RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ITIH4Q14624 930 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 KIR3DS1Q14943 382 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TMED2Q15363 201 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CRY1Q16526 586 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CDKN3Q16667 212 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 INSCQ1MX18 579 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 SETMARQ53H47 684 aaPredicted RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 LDLRAP1Q5SW96 308 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 LRRC66Q68CR7 880 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3GQ6DHY5 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 ZNF470Q6ECI4 717 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TBC1D3CQ6IPX1 549 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 KIAA1161Q6NSJ0 714 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 FAM45BPQ6NSW5 357 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 TRMT10BQ6PF06 316 aaKnown RBP4.96□□□□□ -1.62
VTI1B-202ENST00000553619 CYP2R1Q6VVX0 501 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 PACS1Q6VY07 963 aa4.96□□□□□ -1.62
VTI1B-202ENST00000553619 PARS2Q7L3T8 475 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms