RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	PPM1B	O75688	479 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	UBOX5	O94941	541 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	TJP3	O95049	919 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ASMTL	O95671	621 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CPNE6	O95741	557 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC4A1	P02730	911 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	TP53	P04637	393 aa	Predicted RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ATP1A1	P05023	1023 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	H2AFB1	P0C5Y9	115 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	H2AFB2	P0C5Z0	115 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PIRT	P0C851	137 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	BPI	P17213	487 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	RBMS1	P29558	406 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CETN2	P41208	172 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	MAZ	P56270	477 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	WNT3A	P56704	352 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CCL7	P80098	99 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	B4GALNT1	Q00973	533 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	OTUD4	Q01804	1114 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	KIF5A	Q12840	1032 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PLA2G4E	Q3MJ16	856 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	MAP9	Q49MG5	647 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SIRPB2	Q5JXA9	342 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CCDC181	Q5TID7	509 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ZDHHC20	Q5W0Z9	365 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ALS2CL	Q60I27	953 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ITPRIPL1	Q6GPH6	555 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	C19orf48	Q6RUI8	117 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	MARK2	Q7KZI7	788 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PEX26	Q7Z412	305 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	KDELC2	Q7Z4H8	507 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PHYKPL	Q8IUZ5	450 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CDKL3	Q8IVW4	592 aa	Predicted RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SPACA3	Q8IXA5	215 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	UBL4B	Q8N7F7	174 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	AVL9	Q8NBF6	648 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	GPR26	Q8NDV2	337 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ACTL9	Q8TC94	416 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	DTX3L	Q8TDB6	740 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	ALG3	Q92685	438 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	GLYATL1	Q969I3	302 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PPP1R14A	Q96A00	147 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PRR11	Q96HE9	360 aa	Predicted RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	OXNAD1	Q96HP4	312 aa	Predicted RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC46A1	Q96NT5	459 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PPP1R2P1	Q96PQ5	205 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	VPS35	Q96QK1	796 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	HERPUD2	Q9BSE4	406 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SPATA16	Q9BXB7	569 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	HEMGN	Q9BXL5	484 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	FSD1L	Q9BXM9	530 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	FOXP3	Q9BZS1	431 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	C1GALT1	Q9NS00	363 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	RSPH14	Q9UHP6	348 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PCDHGA7	Q9Y5G6	932 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	SPO11	Q9Y5K1	396 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	IGSF10	Q6WRI0	2623 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	LOC400499	M0QZD8	3231 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ANKRD34B	A5PLL1	514 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440		A6NCN8	305 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440		H7C0C1	242 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	MSTN	O14793	375 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	CHUK	O15111	745 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	GRID2	O43424	1007 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	VEGFD	O43915	354 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	PPFIA2	O75334	1257 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ANXA9	O76027	345 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLITRK5	O94991	958 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC25A14	O95258	325 aa	Predicted RBP	7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	RBP3	P10745	1247 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ACP5	P13686	325 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	F3	P13726	295 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC2A4	P14672	509 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ITPKB	P27987	946 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	RBL1	P28749	1068 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ATP5O	P48047	213 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	CLCNKA	P51800	687 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	GEM	P55040	296 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	UCN	P55089	124 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	TLE3	Q04726	772 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	ZFP36L1	Q07352	338 aa	Known RBP	7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	BIRC2	Q13490	618 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC1A5	Q15758	541 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	FAM182A	Q5T1J6	154 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SEZ6L2	Q6UXD5	910 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	RAB11FIP2	Q7L804	512 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	PID1	Q7Z2X4	250 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	GLT6D1	Q7Z4J2	308 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SFRP1	Q8N474	314 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440		Q8N9G6	341 aa	Predicted RBP	7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	IPMK	Q8NFU5	416 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC37A2	Q8TED4	501 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	KCNE4	Q8WWG9	221 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	PATE1	Q8WXA2	126 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	PSMG3-AS1	Q96PY0	264 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	CMKLR1	Q99788	373 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	DPYSL5	Q9BPU6	564 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	GORASP1	Q9BQQ3	440 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	DESI2	Q9BSY9	194 aa		7.57	□□□□□ -1.2
SNHG1-223	ENST00000545440	DPH1	Q9BZG8	443 aa		7.57	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms