RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NYNRINQ9P2P1 1898 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 PTPRJQ12913 1337 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ZNF638Q14966 1978 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 SMIM28A0A1B0GU29 152 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 TCRBV5S2A0A599 114 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 LCHNA4D1U4 455 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 HMX3A6NHT5 357 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 F8VP50 259 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 AURKAO14965 403 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SYN3O14994 580 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CAPN5O15484 640 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 TLL1O43897 1013 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NRP2O60462 931 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SYNCRIPO60506 623 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 ZMPSTE24O75844 475 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RECQL4O94761 1208 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 MATN4O95460 622 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 APOA1P02647 267 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 GNAO1P09471 354 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CLCNKBP51801 687 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 WNT7BP56706 349 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 EEFSECP57772 596 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 COPZ1P61923 177 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RPL7AP62424 266 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 PRAMEP78395 509 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DDR2Q16832 855 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CEP78Q5JTW2 689 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.19□□□□□ -1.58
USP28-213ENST00000544967 VWA5B1Q5TIE3 1220 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 KIAA0319Q5VV43 1072 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 METTL11BQ5VVY1 283 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DDIASQ8IXT1 998 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 C8orf59Q8N0T1 100 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 SIX5Q8N196 739 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SVOPLQ8N434 492 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CCDC185Q8N715 623 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NAXEQ8NCW5 288 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 BPIFB1Q8TDL5 484 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SLC22A17Q8WUG5 538 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 STYXQ8WUJ0 223 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 KCTD13Q8WZ19 329 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 REXO5Q96IC2 774 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 CPB2Q96IY4 423 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SUSD3Q96L08 255 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RNF157Q96PX1 679 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 TRMOQ9BU70 441 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ADAM33Q9BZ11 813 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 B3GNT4Q9C0J1 378 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SLIRPQ9GZT3 109 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 XYLT2Q9H1B5 865 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SEMA6AQ9H2E6 1030 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RNF39Q9H2S5 420 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 MIOSQ9NXC5 875 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.19□□□□□ -1.58
USP28-213ENST00000544967 BAG5Q9UL15 447 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SLC27A5Q9Y2P5 690 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RNF103-CHMP3A0A140T963 221 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 EPOPA6NHQ4 379 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SNTNA6NMZ2 147 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 TARM1B6A8C7 271 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 M0R3G1 203 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 M0R3H8 397 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SDHDO14521 159 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 GABRDO14764 452 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ANGPT2O15123 496 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RAD51BO15315 384 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 MED7O43513 233 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DAB1O75553 588 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CCNKO75909 580 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DDHD2O94830 711 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 KCNK2O95069 426 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 OAZ2O95190 189 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NADKO95544 446 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 LDLRP01130 860 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 HLA-DRAP01903 254 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 GALTP07902 379 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ITGA2P17301 1181 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CKMT2P17540 419 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CHRM3P20309 590 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 PSMA2P25787 234 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 HTR1BP28222 390 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 TYK2P29597 1187 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 POLR2IP36954 125 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 IL1RL1Q01638 556 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DAG1Q14118 895 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 LLGL1Q15334 1064 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NEDD8Q15843 81 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 PERM1Q5SV97 790 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 PIK3R6Q5UE93 754 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 RSBN1Q5VWQ0 802 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 KDELC1Q6UW63 502 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 DSG4Q86SJ6 1040 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ZBTB33Q86T24 672 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 OSTM1Q86WC4 334 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 TMEM192Q8IY95 271 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ELMOD2Q8IZ81 293 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CBARPQ8N350 705 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 CANT1Q8WVQ1 401 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 MRPL38Q96DV4 380 aaKnown RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 IGSF21Q96ID5 467 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms