RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 TPOP07202 933 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 IFNAR1P17181 557 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 TRIM21P19474 475 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 UBA1P22314 1058 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 SP100P23497 879 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 HOXC9P31274 260 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PSMD7P51665 324 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 GALCP54803 685 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PPARDQ03181 441 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 ZNF155Q12901 538 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 GRIK2Q13002 908 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 COASYQ13057 564 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 ALCAMQ13740 583 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 SNTB1Q13884 538 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 NAB2Q15742 525 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 CRY2Q49AN0 593 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 SETMARQ53H47 684 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 ZNF628Q5EBL2 1059 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 KCNT1Q5JUK3 1230 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PMS2CLQ68D20 193 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 C11orf88Q6PI97 169 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.18□□□□□ -1.9
USP28-210ENST00000542033 CFAP77Q6ZQR2 320 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 FAM47EQ6ZV65 393 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 SFR1Q86XK3 245 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 FAM114A1Q8IWE2 563 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 FOXRED2Q8IWF2 684 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 MCEMP1Q8IX19 187 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 GBP7Q8N8V2 638 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 MCUQ8NE86 351 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 GOT1L1Q8NHS2 421 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 GOLGA5Q8TBA6 731 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 ZKSCAN4Q969J2 545 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 IGSF8Q969P0 613 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 CENPTQ96BT3 561 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 DTNBP1Q96EV8 351 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 DGAT2Q96PD7 388 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 NAP1L3Q99457 506 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 MTERF1Q99551 399 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 SEPT5Q99719 369 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 CMKLR1Q99788 373 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 SRSF8Q9BRL6 282 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 NACA2Q9H009 215 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 GAREM1Q9H706 876 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PCDH9Q9HC56 1237 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PFDN4Q9NQP4 134 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 ACSS1Q9NUB1 689 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 SETD4Q9NVD3 440 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 DCAF16Q9NXF7 216 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 WSB2Q9NYS7 404 aaPredicted RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 C1RLQ9NZP8 487 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 POLKQ9UBT6 870 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 AMACRQ9UHK6 382 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 CTNNA3Q9UI47 895 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 ANAPC2Q9UJX6 822 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 PADI1Q9ULC6 663 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 R3HDM2Q9Y2K5 976 aaKnown RBP3.18□□□□□ -1.9
USP28-210ENST00000542033 AMDHD2Q9Y303 409 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 CMAHPQ9Y471 501 aa3.18□□□□□ -1.9
USP28-210ENST00000542033 RB1CC1Q8TDY2 1594 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 EVPLQ92817 2033 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 DHX57Q6P158 1386 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 A0A0G2JPF8 293 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 A0A1B0GUA9 196 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 TRBC2A0A5B9 178 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 C1orf226A1L170 272 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 A6NL46 340 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 SMTNL1A8MU46 457 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 HNRNPCL3B7ZW38 293 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 H0Y626 953 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 HS3ST1O14792 307 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 WDR46O15213 610 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 MID1O15344 667 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 SLC16A5O15375 505 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 STAM2O75886 525 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 NEBLO76041 1014 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 SNRNP70P08621 437 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 LINC00271P0C7V0 271 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 HNRNPCL4P0DMR1 293 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 CYP11B2P19099 503 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 CPT2P23786 658 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 GNL1P36915 607 aaPredicted RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 IL15P40933 162 aaPredicted RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 TMPOP42166 694 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 PRCPP42785 496 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 CSE1LP55060 971 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 TPM4P67936 248 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 RPL36AP83881 106 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 PDE1BQ01064 536 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 POU3F1Q03052 451 aaPredicted RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 EEF1A2Q05639 463 aaKnown RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 ZBTB17Q13105 803 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 MAD2L1Q13257 205 aaPredicted RBP3.17□□□□□ -1.9
USP28-210ENST00000542033 GRAPQ13588 217 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 CDONQ4KMG0 1287 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 BOLA3Q53S33 107 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 SPDYCQ5MJ68 293 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 DCST1Q5T197 706 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 IRAK1BP1Q5VVH5 260 aa3.17□□□□□ -1.9
USP28-210ENST00000542033 FRG2Q64ET8 278 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms