RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 BRINP3Q76B58 766 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 Q8N402 240 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 CD101Q93033 1021 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 GTPBP3Q969Y2 492 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 EIF5A2Q9GZV4 153 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 NT5MQ9NPB1 228 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RBM22Q9NW64 420 aaKnown RBP eCLIP8.66□□□□□ -1.027e-6■■■■□ 24.6
YBX3-208ENST00000540447 COL20A1Q9P218 1284 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 PRKAG2Q9UGJ0 569 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 SALL4Q9UJQ4 1053 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 FFAR3O14843 346 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 GPR42O15529 346 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 UGT2B17O75795 530 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 C2P06681 752 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 HMBSP08397 361 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SRCP12931 536 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 EPCAMP16422 314 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 ITGB6P18564 788 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 CASP3P42574 277 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SLC10A7Q0GE19 358 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 HNRNPA0Q13151 305 aaKnown RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 GK2Q14410 553 aaPredicted RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 RC3H1Q5TC82 1133 aaKnown RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 RFKQ969G6 155 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 FEM1CQ96JP0 617 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 MMP19Q99542 508 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 ABCB8Q9NUT2 735 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 NOP16Q9Y3C1 178 aaKnown RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 UGT2A1Q9Y4X1 527 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 TRPV2Q9Y5S1 764 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 MLH3Q9UHC1 1453 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 KRBOX1C9JBD0 128 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 H0YAE9 185 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SLC9A3R1O14745 358 aaPredicted RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 XYLBO75191 536 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 COL6A1P12109 1028 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 VAMP1P23763 118 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 ICAM3P32942 547 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 MAMLD1Q13495 774 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 COL28A1Q2UY09 1125 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 FAM214AQ32MH5 1076 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 PGBD3Q8N328 593 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 RPLP0P6Q8NHW5 317 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 HAPLN3Q96S86 360 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 CISHQ9NSE2 258 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 KIAA1257Q9ULG3 409 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 PCDHGB6Q9Y5F9 930 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 PDCD5O14737 125 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 CPB1P15086 417 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 AQP1P29972 269 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 CCR1P32246 355 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 CACNB3P54284 484 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 IL2P60568 153 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 FLI1Q01543 452 aaPredicted RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 TOMM20Q15388 145 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 DOK7Q18PE1 504 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SPRED3Q2MJR0 410 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 KANK2Q63ZY3 851 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SLC25A25Q6KCM7 469 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 IDO2Q6ZQW0 420 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 SV2AQ7L0J3 742 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 RBM23Q86U06 439 aaKnown RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 GDPD1Q8N9F7 314 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 OR4Q3Q8NH05 313 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 AGXT2Q9BYV1 514 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 ZNF408Q9H9D4 720 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 ERVMER34-1Q9H9K5 563 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 RPS10P5Q9NQ39 176 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 TLR8Q9NR97 1041 aaKnown RBP8.65□□□□□ -1.02
YBX3-208ENST00000540447 FANCAO15360 1455 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 IGSF1Q8N6C5 1336 aa8.65□□□□□ -1.02
YBX3-208ENST00000540447 C9JVG2 144 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 AIPO00170 330 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 CCNB2O95067 398 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 SNAPINO95295 136 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 H2AFB2P0C5Z0 115 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 AGAP7PQ5VUJ5 663 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 QSOX2Q6ZRP7 698 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 POGLUT1Q8NBL1 392 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 OR13J1Q8NGT2 312 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 C1orf216Q8TAB5 229 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 C7orf34Q96L11 122 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 MUS81Q96NY9 551 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 ASPNQ9BXN1 380 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 RNF121Q9H920 327 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 SRRDQ9UH36 339 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 TRAV20A0A0B4J274 112 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 SERPINB7O75635 380 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 CYP2A7P20853 494 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 CHRNA5P30532 468 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 SERPINF1P36955 418 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 MAP2K4P45985 399 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 ZNF33BQ06732 778 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 DYRK1AQ13627 763 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 GPAT3Q53EU6 434 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 C3orf33Q6P1S2 294 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 FANK1Q8TC84 345 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 TWIST2Q8WVJ9 160 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 MED8Q96G25 268 aa8.65□□□□□ -1.03
YBX3-208ENST00000540447 LIN37Q96GY3 246 aaPredicted RBP8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms