RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 F9P00740 461 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SLC4A1P02730 911 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 HTR1AP08908 422 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SLC35E2BP0CK96 405 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ERVK-10P10266 1014 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CD19P15391 556 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NAGAP17050 411 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 LBPP18428 481 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 EFNA1P20827 205 aaPredicted RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 ELK4P28324 431 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SHMT2P34897 504 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 EPHX2P34913 555 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ARL2P36404 184 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NR4A2P43354 598 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 MAGEA11P43364 429 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 OR3A3P47888 321 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 HCAR3P49019 387 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ACOT2P49753 483 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 GSK3BP49841 420 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 HUNKP57058 714 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SESN2P58004 480 aaPredicted RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 OLR1P78380 273 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SLC35A2P78381 396 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 GALK2Q01415 458 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SLC6A3Q01959 620 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 EMX1Q04741 257 aaPredicted RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 EMX2Q04743 252 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 MTM1Q13496 603 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 TTLL4Q14679 1199 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 USP10Q14694 798 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 COL19A1Q14993 1142 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ACAP2Q15057 778 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PAFAH1B3Q15102 231 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 TAF5Q15542 800 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CEP78Q5JTW2 689 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ATAD3CQ5T2N8 411 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 UBE2UQ5VVX9 321 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 MLIPQ5VWP3 458 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 STEAP3Q658P3 488 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NAPEPLDQ6IQ20 393 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 APOBEC3HQ6NTF7 200 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 PMF1Q6P1K2 205 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 LETMD1Q6P1Q0 360 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CREB3L2Q70SY1 520 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NOXA1Q86UR1 476 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 LDHDQ86WU2 507 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NT5DC4Q86YG4 428 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 RAB43Q86YS6 212 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 FUNDC1Q8IVP5 155 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 ADHFE1Q8IWW8 467 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 TCTE3Q8IZS6 198 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CLIP4Q8N3C7 705 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 EMC1Q8N766 993 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PSD4Q8NDX1 1056 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 OR5B17Q8NGF7 314 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 OR5K1Q8NHB7 308 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 DNAJB8Q8NHS0 232 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PSMA8Q8TAA3 256 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 GIMAP1Q8WWP7 306 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 LPAR1Q92633 364 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SLC38A4Q969I6 547 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 DCPSQ96C86 337 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 BIRC7Q96CA5 298 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 TMEM176AQ96HP8 235 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 VPS35Q96QK1 796 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 COQ7Q99807 217 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 TMEM246Q9BRR3 403 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 BTBD2Q9BX70 525 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 NUSAP1Q9BXS6 441 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 LRRC3Q9BY71 257 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 GABARAPL1Q9H0R8 117 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 XYLT2Q9H1B5 865 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 IRF2BPLQ9H1B7 796 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 POLR3FQ9H1D9 316 aaPredicted RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 GORASP2Q9H8Y8 452 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 C3orf14Q9HBI5 128 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 RPRD1BQ9NQG5 326 aaKnown RBP6.61□□□□□ -1.35
USP28-207ENST00000538475 ACOXLQ9NUZ1 547 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CMTM6Q9NX76 183 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 GTSE1Q9NYZ3 720 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 SEPT10Q9P0V9 454 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 CYTH4Q9UIA0 394 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 KLHL21Q9UJP4 597 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 BTBD3Q9Y2F9 522 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PCDHGA3Q9Y5H0 932 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PMF1-BGLAPU3KQ54 211 aa6.61□□□□□ -1.35
USP28-207ENST00000538475 PLXNA1Q9UIW2 1896 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 LOC100130705A0A1B0GUX0 176 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 ZSCAN5BA6NJL1 495 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 SNTNA6NMZ2 147 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 G3V2T6 193 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 H3BMM5 538 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 UPK1AO00322 258 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 ARNTLO00327 626 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 EEF2KO00418 725 aaKnown RBP6.6□□□□□ -1.35
USP28-207ENST00000538475 CD3EAPO15446 510 aaKnown RBP6.6□□□□□ -1.35
USP28-207ENST00000538475 RGS10O43665 173 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 CILPO75339 1184 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 TSPAN9O75954 239 aa6.6□□□□□ -1.35
USP28-207ENST00000538475 SNAPC5O75971 98 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms