RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CCDC89Q8N998 374 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ZBTB8BQ8NAP8 495 aaPredicted RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 DEFB124Q8NES8 71 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 METTL6Q8TCB7 284 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ACER1Q8TDN7 264 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 SH3KBP1Q96B97 665 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ZNF689Q96CS4 500 aaPredicted RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 NR1H4Q96RI1 486 aaPredicted RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 CD180Q99467 661 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CADM1Q9BY67 442 aaKnown RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 SLC32A1Q9H598 525 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 PPP1R14DQ9NXH3 145 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ALKBH4Q9NXW9 302 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 TAS2R10Q9NYW0 307 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CLIC5Q9NZA1 410 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 HCN3Q9P1Z3 774 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 SEL1LQ9UBV2 794 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 SARDHQ9UL12 918 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 OSGIN2Q9Y236 505 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 PIAS3Q9Y6X2 628 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 SCN10AQ9Y5Y9 1956 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 MTORP42345 2549 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ATMQ13315 3056 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 FRMPD4Q14CM0 1322 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 LRBAP50851 2863 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 PLSCR5A0PG75 271 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 NPIPB15A6NHN6 443 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 TSPAN4O14817 238 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 SYN3O14994 580 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 LDLRAD4O15165 306 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 TGFB1I1O43294 461 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 KIF1CO43896 1103 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 KCNJ13O60928 360 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 ZBTB11O95625 1053 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 MLYCDO95822 493 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 DDAH2O95865 285 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 URODP06132 367 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 HSP90AA1P07900 732 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 RFC1P35251 1148 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 GJC1P36383 396 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 THPOP40225 353 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 MTNR1AP48039 350 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 HARS2P49590 506 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 CDH15P55291 814 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 SETQ01105 290 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 POU3F1Q03052 451 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 AP5B1Q2VPB7 878 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 SYTL3Q4VX76 610 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 TAF1BQ53T94 588 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 RARS2Q5T160 578 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 GFI1BQ5VTD9 330 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 TMEM268Q5VZI3 342 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 AADACL2Q6P093 401 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 GJB7Q6PEY0 223 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 GSG1LQ6UXU4 331 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 ATF7IPQ6VMQ6 1270 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 MON1BQ7L1V2 547 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 SERPINA11Q86U17 422 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 LONP2Q86WA8 852 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 DZIP1Q86YF9 867 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 TMED6Q8WW62 240 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 RAB40AQ8WXH6 277 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 APBB2Q92870 758 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 RSRC1Q96IZ7 334 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 DUX5Q96PT3 197 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 C1QTNF4Q9BXJ3 329 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 ITPAQ9BY32 194 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 LTB4R2Q9NPC1 389 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 UPB1Q9UBR1 384 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 KCNG2Q9UJ96 466 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 GPR34Q9UPC5 381 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 MTF2Q9Y483 593 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 MIA3Q5JRA6 1907 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 RAD50Q92878 1312 aa3.91□□□□□ -1.78
CD44-235ENST00000532339 SPENQ96T58 3664 aaKnown RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 COL5A1P20908 1838 aaPredicted RBP3.91□□□□□ -1.78
CD44-235ENST00000532339 SPAARA0A1B0GVQ0 90 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 A0A1W2PQM1 296 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 ASB14A6NK59 587 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 RSPH10B2B2RC85 870 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 TEX22C9J3V5 150 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 SLC16A5O15375 505 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 ITM2AO43736 263 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 PTP4A3O75365 173 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 RSPH10BP0C881 870 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 UBL4AP11441 157 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 LAMP2P13473 410 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 ZNF12P17014 697 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 CD72P21854 359 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 ADSSP30520 456 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 CCR3P51677 355 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 NAP1L1P55209 391 aaKnown RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 SRSF5Q13243 272 aaKnown RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 IL13RA2Q14627 380 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 MLF2Q15773 248 aaPredicted RBP3.9□□□□□ -1.79
CD44-235ENST00000532339 KIF19Q2TAC6 998 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 DUSP28Q4G0W2 176 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 ZNF667Q5HYK9 610 aa3.9□□□□□ -1.79
CD44-235ENST00000532339 EFHC1Q5JVL4 640 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms