RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 HGH1Q9BTY7 390 aa4.36□□□□□ -1.71
CD44-223ENST00000526553 FTOQ9C0B1 505 aaKnown RBP eCLIP4.36□□□□□ -1.71
CD44-223ENST00000526553 ZNF696Q9H7X3 374 aa4.36□□□□□ -1.71
CD44-223ENST00000526553 APOBEC3GQ9HC16 384 aaKnown RBP4.36□□□□□ -1.71
CD44-223ENST00000526553 ZNF215Q9UL58 517 aaPredicted RBP4.36□□□□□ -1.71
CD44-223ENST00000526553 JRKLQ9Y4A0 524 aa4.36□□□□□ -1.71
CD44-223ENST00000526553 AGAP14A8MT82 685 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 SMIM1B2RUZ4 78 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 BLOC1S5-TXNDC5H3BN57 136 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 NDUFS4O43181 175 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 KRT19P08727 400 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 AKR1B1P15121 316 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 ACTN2P35609 894 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 ANO5Q75V66 913 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 DGLUCYQ7Z3D6 616 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 PRPF39Q86UA1 669 aaKnown RBP4.35□□□□□ -1.71
CD44-223ENST00000526553 TAGAPQ8N103 731 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 SRSF8Q9BRL6 282 aaKnown RBP4.35□□□□□ -1.71
CD44-223ENST00000526553 RBM4Q9BWF3 364 aaKnown RBP4.35□□□□□ -1.71
CD44-223ENST00000526553 SEMA6AQ9H2E6 1030 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 SMARCAD1Q9H4L7 1026 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 DENND2DQ9H6A0 471 aaPredicted RBP4.35□□□□□ -1.71
CD44-223ENST00000526553 DNAJC18Q9H819 358 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 SLC38A7Q9NVC3 462 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 AMACRQ9UHK6 382 aa4.35□□□□□ -1.71
CD44-223ENST00000526553 MITFO75030 526 aaPredicted RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 GAS8-AS1O95177 125 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 GCNT3O95395 438 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 LDLRP01130 860 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 NR3C1P04150 777 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 PRLRP16471 622 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 MSH3P20585 1137 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 KRTAP10-7P60409 375 aaPredicted RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 MRPS5P82675 430 aaKnown RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 MFAP5Q13361 173 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 KCNC3Q14003 757 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 ZC2HC1CQ53FD0 456 aaPredicted RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 ARHGAP17Q68EM7 881 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 SZRD1Q7Z422 152 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 TRPT1Q86TN4 253 aaKnown RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 WDSUB1Q8N9V3 476 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 FCAMRQ8WWV6 532 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 LRRC59Q96AG4 307 aaKnown RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 LGALS12Q96DT0 336 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 PRMT6Q96LA8 375 aaPredicted RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 SLF1Q9BQI6 1058 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 MAK16Q9BXY0 300 aaKnown RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 MORF4L1Q9UBU8 362 aa4.34□□□□□ -1.71
CD44-223ENST00000526553 ZNF644Q9H582 1327 aaPredicted RBP4.34□□□□□ -1.71
CD44-223ENST00000526553 TEX13DA0A0J9YY54 714 aaPredicted RBP4.33□□□□□ -1.72
CD44-223ENST00000526553 P4HA2O15460 535 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 GPR137BO60478 399 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 DKC1O60832 514 aaKnown RBP eCLIP4.33□□□□□ -1.72
CD44-223ENST00000526553 CAVIN2O95810 425 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 TSHBP01222 138 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 IGHV4-38-2P0DP08 117 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 ERVK-10P10266 1014 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 NR2F1P10589 423 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 HOXC8P31273 242 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 NR0B1P51843 470 aaKnown RBP4.33□□□□□ -1.72
CD44-223ENST00000526553 STK4Q13043 487 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 IRF3Q14653 427 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 TMEM30BQ3MIR4 351 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 ZNF876PQ49A33 203 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 CEP85LQ5SZL2 805 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 SLC30A6Q6NXT4 461 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 RBMS3Q6XE24 437 aaKnown RBP4.33□□□□□ -1.72
CD44-223ENST00000526553 APLFQ8IW19 511 aaPredicted RBP4.33□□□□□ -1.72
CD44-223ENST00000526553 GPALPP1Q8IXQ4 340 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 L3MBTL4Q8NA19 623 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 SEMA4DQ92854 862 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 JAKMIP2Q96AA8 810 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 CEP295NLQ96MC4 621 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 HRH4Q9H3N8 390 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 ADPRHL2Q9NX46 363 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 MIOSQ9NXC5 875 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 CFDP1Q9UEE9 299 aaPredicted RBP4.33□□□□□ -1.72
CD44-223ENST00000526553 RPS6KA6Q9UK32 745 aa4.33□□□□□ -1.72
CD44-223ENST00000526553 A0A0G2JLW4 131 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 A0A1W2PRQ8 180 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 LRRC72A6NJI9 287 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 SYNCRIPO60506 623 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 CIDEAO60543 219 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 ZG16O60844 167 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 DNTTP04053 509 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 H1F0P07305 194 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 PATE4P0C8F1 98 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 NMBRP28336 390 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 NNMTP40261 264 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 SNX16P57768 344 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 SNRPEP62304 92 aaKnown RBP4.32□□□□□ -1.72
CD44-223ENST00000526553 PPP2R2BQ00005 443 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 PPIGQ13427 754 aaKnown RBP eCLIP4.32□□□□□ -1.72
CD44-223ENST00000526553 BECN1Q14457 450 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 PSMD6Q15008 389 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 RAB41Q5JT25 222 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 GPR139Q6DWJ6 353 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 ANKRD23Q86SG2 305 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 TRIM58Q8NG06 486 aa4.32□□□□□ -1.72
CD44-223ENST00000526553 TBC1D16Q8TBP0 767 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms