RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BMP10O95393 424 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 KCNE1P15382 129 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TAF1AQ15573 450 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 RABL3Q5HYI8 236 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CCNYL2Q5T2Q4 361 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 PLPP4Q5VZY2 271 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 C11orf65Q8NCR3 313 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 C1GALT1C1Q96EU7 318 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 MUC13Q9H3R2 512 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 INTS7Q9NVH2 962 aaKnown RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 SEC14L3Q9UDX4 400 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 MYH3P11055 1940 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TNFRSF11BO00300 401 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 SCELO95171 688 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 GLUD1P00367 558 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 FESP07332 822 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 ZBTB48P10074 688 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 GSK3BP49841 420 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 SFSWAPQ12872 951 aaKnown RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 MTAPQ13126 283 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 NOGQ13253 232 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CCDC157Q569K6 752 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 S100ZQ8WXG8 99 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TMEM74Q96NL1 305 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 FCRL3Q96P31 734 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 CHCHD6Q9BRQ6 235 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 STRA6Q9BX79 667 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 LRRC3Q9BY71 257 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 MFSD1Q9H3U5 465 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TRNAU1APQ9NX07 287 aaKnown RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 SUCOQ9UBS9 1254 aaKnown RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 MTX2O75431 263 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SERPINA1P01009 418 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SLC26A3P40879 764 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 GDF5P43026 501 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 DEFB115Q30KQ5 88 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SULT1C3Q6IMI6 304 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 TXNDC5Q8NBS9 432 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 OR10Q1Q8NGQ4 319 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 TIFAQ96CG3 184 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 NUSAP1Q9BXS6 441 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 TXLNGYQ9BZA5 131 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 C8orf4Q9NR00 106 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 INTS10Q9NVR2 710 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 H3BSA7 217 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 ARPC2O15144 300 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 GRM6O15303 877 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 ATG13O75143 517 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 STX11O75558 287 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 CLIC3O95833 236 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 CDH12P55289 794 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SMIM11AP58511 58 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 C9orf64Q5T6V5 341 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 GPR153Q6NV75 609 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 DPF3Q92784 378 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SLC38A2Q96QD8 506 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 ZNF607Q96SK3 696 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 LIN28AQ9H9Z2 209 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 ZBTB26Q9HCK0 441 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 AQP12BA6NM10 295 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 AP3D1O14617 1153 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 EDIL3O43854 480 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 UGT2B11O75310 529 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 FABP3P05413 133 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 BMP7P18075 431 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 TLX1P31314 330 aaPredicted RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 PTPN5P54829 565 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 TRAP1Q12931 704 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 HERC3Q15034 1050 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 KLHL12Q53G59 568 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 BHLHB9Q6PI77 547 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 RNF44Q7L0R7 432 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 OTOP2Q7RTS6 562 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 C14orf80Q86SX3 495 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 AQP12AQ8IXF9 295 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 IZUMO1Q8IYV9 350 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 HPS1Q92902 700 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 EXOSC8Q96B26 276 aaKnown RBP12.5□□□□□ -0.41
USP53-209ENST00000514665 CXorf40BQ96DE9 158 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SCLYQ96I15 445 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 MIPEPQ99797 713 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 SPATA5L1Q9BVQ7 753 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 C1orf21Q9H246 121 aa12.5□□□□□ -0.41
USP53-209ENST00000514665 TRBV23OR9-2A0A075B6M9 112 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 FAM234BA2RU67 622 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 H0YC42 278 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 SNPHO15079 494 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 SLC22A2O15244 555 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 CCL16O15467 120 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 TULP3O75386 442 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 PPM1AP35813 382 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 SOX4Q06945 474 aaPredicted RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 PPP1R3AQ16821 1122 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 GDF6Q6KF10 455 aaPredicted RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 LYSMD3Q7Z3D4 306 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 CSGALNACT1Q8TDX6 532 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 FAR1Q8WVX9 515 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 GTPBP3Q969Y2 492 aaKnown RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 MRPL48Q96GC5 212 aaKnown RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 KLHL32Q96NJ5 620 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms