RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TPSB2P20231 275 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 GRK5P34947 590 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SOX6P35712 828 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 NR2C2P49116 596 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 OR4D2P58180 307 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CYP4F2P78329 520 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC35A2P78381 396 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CYP4F3Q08477 520 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 FGFBP1Q14512 234 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 LAPTM4AQ15012 233 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 QPRTQ15274 297 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TPSAB1Q15661 275 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 DDR2Q16832 855 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF484Q5JVG2 852 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF691Q5VV52 312 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 LAIR1Q6GTX8 287 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CYS1Q717R9 158 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 GLCCI1Q86VQ1 547 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TCTE3Q8IZS6 198 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 MINDY1Q8N5J2 469 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RDM1Q8NG50 284 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ENKURQ8TC29 256 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CLEC4DQ8WXI8 215 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 COPS4Q9BT78 406 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TBCDQ9BTW9 1192 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CCDC32Q9BV29 185 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RNF121Q9H920 327 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SLAMF7Q9NQ25 335 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 STAP1Q9ULZ2 295 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ORC6Q9Y5N6 252 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PTGDR2Q9Y5Y4 395 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 COL22A1Q8NFW1 1626 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 LINC00587B1AMM8 73 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SSX5O60225 188 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 GMDSO60547 372 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RETP07949 1114 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ARP10275 920 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 HOXB3P14651 431 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDH1Q08174 1060 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CSTF3Q12996 717 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 GRIK2Q13002 908 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SEMA3BQ13214 749 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF273Q14593 569 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 DENND1BQ6P3S1 775 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM151AQ8N4L1 468 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 BPIFB1Q8TDL5 484 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TFAP2BQ92481 460 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 UBE2FQ969M7 185 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TTLL2Q9BWV7 592 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 GTPBP2Q9BX10 602 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC22A4Q9H015 551 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RANBP3Q9H6Z4 567 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 NIPAL2Q9H841 368 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDHGA9Q9Y5G4 932 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 E9PAM4 449 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CYP11A1P05108 521 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 HOXB1P14653 301 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CLCN7P51798 805 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RAB25P57735 213 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ABATP80404 500 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TATDN3Q17R31 274 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ZACNQ401N2 412 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM98BQ52LJ0 330 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TEX261Q6UWH6 196 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CUZD1Q86UP6 607 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 VWA5B2Q8N398 1253 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 TXNDC5Q8NBS9 432 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 DCLRE1CQ96SD1 692 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PPP1R16BQ96T49 567 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 DPCDQ9BVM2 203 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 AMNQ9BXJ7 453 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RACGAP1Q9H0H5 632 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 MCUBQ9NWR8 336 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 MAFFQ9ULX9 164 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CACNG2Q9Y698 323 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 CLCA3PQ9Y6N3 262 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 U3KQ87 197 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PTPRJQ12913 1337 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 GLI3P10071 1580 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 IGLV3-22A0A075B6J6 115 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 A0A1W2PP18 115 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 BCLAF3A2AJT9 711 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 FOSP01100 380 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 MAGEA6P43360 314 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PER3P56645 1201 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 TRAPPC3LQ5T215 181 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 NAPEPLDQ6IQ20 393 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 CCDC190Q86UF4 302 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF366Q8N895 744 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 COLGALT1Q8NBJ5 622 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PAPD5Q8NDF8 572 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 KBTBD8Q8NFY9 601 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDH19Q8TAB3 1148 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 ASB15Q8WXK1 588 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM125Q96AQ2 219 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 C3orf30Q96M34 536 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM126AQ9BYI3 521 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 ZC3H12CQ9C0D7 883 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 C11orf54Q9H0W9 315 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 SPNS1Q9H2V7 528 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms